Click here to switch to the map view.

The map label for this gene is dcrA [H]

Identifier: 78356326

GI number: 78356326

Start: 1297115

End: 1299301

Strand: Direct

Name: dcrA [H]

Synonym: Dde_1279

Alternate gene names: 78356326

Gene position: 1297115-1299301 (Clockwise)

Preceding gene: 78356325

Following gene: 78356328

Centisome position: 34.77

GC content: 54.6

Gene sequence:

>2187_bases
ATGTCTCTTAAACAACTCTTTGCGCTTTCAACAGTACTTATCATGCTGCTTTCGGCAGCTGTTGTGGGCGTTTTTGTAAA
ATACAGAAGTGCTGTTGAGCTGCAGCACAGCGCCATGCGTGAGCGTGACGCGGCTGTTGCACTTTCGCGTGAAATGGCTT
CAGACTCCAATGGGCTTACCGATAATATCCGGCTGTACGGTATGACAGGAGAAGTAAAATACAAAGAAGCGTACATGCGC
ATTCTTGATCAAAGCAACGGTAAAATTCCGAGGAGCGACGGTTCTGTTATAGATTTTATGGACAAGGTCAAGGCGTTCGG
CGTGACCCGTCAGGAGATGGACGCCCTGAAGGCTGCAAAGGAACTTTCCAATGGTCTTGCCGTCATTGAAACGGAAGTCA
TGGATTTTATAGATGCACGCCTGCAACGCGCGGGCAGTGCGGAAAGGTACCGCAGTCAGCTTGATGCGGATGCCATGCAG
CAAATGGCCAGGCTGTATGATGCAGAGTATTATCAGTGGATAAACAAAATCGCCGCCGCAGTGCAGCAGTTCAACACCTC
GCTTTTCAGCAGAACCGAAAAGAGTGTGAACGATGCTCTGGCAACCGGAGAGAGCATGAGTCGCACGTTTTTTGTCATGC
TCGGCGTTTTTATTGTTTTTGTTTTTGCCCTGCTTGTATTTTTGTGGCGCAGTCTCTCGCAGAGTATCGGCGGTGAGCCG
CGTGTCATTGAGCAGGTGGCCGCCGCCATTGCCGCCGGTGATCTGACTGCGGCGGATAAGCTGGACAGAACAACGGCGCG
GGGTGTGGCAGCGGCCATGCTGGGTATCAATGACAGCCTCAATCTGCTTGTGACCGAGATGGTCTCGTCGCTTGAACATA
TCAAACGCGGTAACCTGCGTGCGGAATGCGACGAGAAAAAAGTCCGCGGAGCCTACCGCGAGCTGCTTGCCTCCACCAAC
AAACTTATGGCCACCATTGTCGCTTACTTTGACCTGATCGCCACGCCGCTCATGTGCATAGACAGCGGGTACGATATTCT
TTTTATGAATAAAAAGGGTGCCGAAATGGCAGGCAAGACCCCTCAGCAGGTACGCGGGACAAAATGCCATGACCACTTCC
GCACTGCCGCCTGCCGCACGGGCAGCTGTATCTGCGATCTGGCCATGAAAGCTCATGATGTGACCAGTGGTGAAACCGTT
GCTAATCCGGCGGGTAAAGAACTGCTGGTGTCCTTTTCTGCGGCTCCCATCCTTGATGAAAACGGAGCAGTCATTGGAGC
TTTTGAGCAGATATTTGACGAGACAGCTATAAAATCGGGCCAGCGCAAAATGCAGCAGCTTGCCGGTAATGCCACCAATA
TAGCAGACCGTCTGGCTTCTGCGGCAGAGGAGCTGTCGTCACAGGTTGAGCAGTCGAGCACAGGATCTGACGTGCAGCGC
GAACGCATGGGCGAAACTGCCACAGCCATGGAGGAGATGAACGCCACAGTGCTGGAGGTGGCGCAGAATGCTTCGCACGC
CGCTGATAACGCCGAAGGCAGCAGAACCCGCGCTCATGAAGGCAGCACGGTCGTGGGGCTGCTCATAGAATCCATCCGGC
AGGCGGAGAGGGCCGCAAGAGGGCTGAAAGAACATATGACCGAACTGGGGCAGCAGGCAGAAGGCATAGGCGGCATTATG
AACGTTATTTCAGATATAGCCGACCAGACCAATCTGCTTGCGTTGAATGCCGCCATCGAGGCCGCCCGGGCAGGCGATGC
GGGGCGCGGGTTTGCAGTGGTTGCCGACGAAGTGCGCAAACTGGCGGAAAAGACCATGGTAGCCACCAGCGAGGTAAGCT
CCGTTGTAAATTCTATCCAGAACGGCACGCGGGCGAGCATCGCATCAACCGATGATGCGGTGAATGCCATTGCCAGCAGC
ACAGAACATGCAACCAACTCGCAGGGCAAACTGGCTGAAATAGTTAATCTGGCAGAGACAACGGCCGATCAGGTGCGCGC
CATCGCCACCAGTGCCGAAGAGCAGTCTGCAGTGGCCGACGAAATCACACGCTCGGCTGATGAGGTGAATCAGATAGCAC
TGGATGTTTCACAGGCGATGCAGCAGAGCACGCAGGCTGTGCGTGAACTGGCGGAACTGGCCACGGAACTGCAGACTCTT
ATCAGTGAACTGACTGCCGCACGGTAG

Upstream 100 bases:

>100_bases
ATAACTGAAAAACAGGAGCTCCAGCGTATAGTGGGAAGCAGGGAACGTCATATGAATCGTATATGTTTTGTATCAGCCGG
AAGGTCAGAGGAGGTCATAC

Downstream 100 bases:

>100_bases
TCCCCGGCACTGTTGCAGGTGCATACTATGACCGCCCGGTGCAGCGCTGTGCCGGGCGGTGTTATGTACAGTCTGCAGAC
TGTGCGGGAACTATGGCGAT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 727

Protein sequence:

>728_residues
MSLKQLFALSTVLIMLLSAAVVGVFVKYRSAVELQHSAMRERDAAVALSREMASDSNGLTDNIRLYGMTGEVKYKEAYMR
ILDQSNGKIPRSDGSVIDFMDKVKAFGVTRQEMDALKAAKELSNGLAVIETEVMDFIDARLQRAGSAERYRSQLDADAMQ
QMARLYDAEYYQWINKIAAAVQQFNTSLFSRTEKSVNDALATGESMSRTFFVMLGVFIVFVFALLVFLWRSLSQSIGGEP
RVIEQVAAAIAAGDLTAADKLDRTTARGVAAAMLGINDSLNLLVTEMVSSLEHIKRGNLRAECDEKKVRGAYRELLASTN
KLMATIVAYFDLIATPLMCIDSGYDILFMNKKGAEMAGKTPQQVRGTKCHDHFRTAACRTGSCICDLAMKAHDVTSGETV
ANPAGKELLVSFSAAPILDENGAVIGAFEQIFDETAIKSGQRKMQQLAGNATNIADRLASAAEELSSQVEQSSTGSDVQR
ERMGETATAMEEMNATVLEVAQNASHAADNAEGSRTRAHEGSTVVGLLIESIRQAERAARGLKEHMTELGQQAEGIGGIM
NVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMVATSEVSSVVNSIQNGTRASIASTDDAVNAIASS
TEHATNSQGKLAEIVNLAETTADQVRAIATSAEEQSAVADEITRSADEVNQIALDVSQAMQQSTQAVRELAELATELQTL
ISELTAAR

Sequences:

>Translated_728_residues
MSLKQLFALSTVLIMLLSAAVVGVFVKYRSAVELQHSAMRERDAAVALSREMASDSNGLTDNIRLYGMTGEVKYKEAYMR
ILDQSNGKIPRSDGSVIDFMDKVKAFGVTRQEMDALKAAKELSNGLAVIETEVMDFIDARLQRAGSAERYRSQLDADAMQ
QMARLYDAEYYQWINKIAAAVQQFNTSLFSRTEKSVNDALATGESMSRTFFVMLGVFIVFVFALLVFLWRSLSQSIGGEP
RVIEQVAAAIAAGDLTAADKLDRTTARGVAAAMLGINDSLNLLVTEMVSSLEHIKRGNLRAECDEKKVRGAYRELLASTN
KLMATIVAYFDLIATPLMCIDSGYDILFMNKKGAEMAGKTPQQVRGTKCHDHFRTAACRTGSCICDLAMKAHDVTSGETV
ANPAGKELLVSFSAAPILDENGAVIGAFEQIFDETAIKSGQRKMQQLAGNATNIADRLASAAEELSSQVEQSSTGSDVQR
ERMGETATAMEEMNATVLEVAQNASHAADNAEGSRTRAHEGSTVVGLLIESIRQAERAARGLKEHMTELGQQAEGIGGIM
NVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMVATSEVSSVVNSIQNGTRASIASTDDAVNAIASS
TEHATNSQGKLAEIVNLAETTADQVRAIATSAEEQSAVADEITRSADEVNQIALDVSQAMQQSTQAVRELAELATELQTL
ISELTAAR
>Mature_727_residues
SLKQLFALSTVLIMLLSAAVVGVFVKYRSAVELQHSAMRERDAAVALSREMASDSNGLTDNIRLYGMTGEVKYKEAYMRI
LDQSNGKIPRSDGSVIDFMDKVKAFGVTRQEMDALKAAKELSNGLAVIETEVMDFIDARLQRAGSAERYRSQLDADAMQQ
MARLYDAEYYQWINKIAAAVQQFNTSLFSRTEKSVNDALATGESMSRTFFVMLGVFIVFVFALLVFLWRSLSQSIGGEPR
VIEQVAAAIAAGDLTAADKLDRTTARGVAAAMLGINDSLNLLVTEMVSSLEHIKRGNLRAECDEKKVRGAYRELLASTNK
LMATIVAYFDLIATPLMCIDSGYDILFMNKKGAEMAGKTPQQVRGTKCHDHFRTAACRTGSCICDLAMKAHDVTSGETVA
NPAGKELLVSFSAAPILDENGAVIGAFEQIFDETAIKSGQRKMQQLAGNATNIADRLASAAEELSSQVEQSSTGSDVQRE
RMGETATAMEEMNATVLEVAQNASHAADNAEGSRTRAHEGSTVVGLLIESIRQAERAARGLKEHMTELGQQAEGIGGIMN
VISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMVATSEVSSVVNSIQNGTRASIASTDDAVNAIASST
EHATNSQGKLAEIVNLAETTADQVRAIATSAEEQSAVADEITRSADEVNQIALDVSQAMQQSTQAVRELAELATELQTLI
SELTAAR

Specific function: Receptor For The Attractant L-Serine And Related Amino Acids. Is Also Responsible For Chemotaxis Away From A Wide Range Of Repellents, Including Leucine, Indole, And Weak Acids. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of At

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=257, Percent_Identity=31.1284046692607, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788194, Length=262, Percent_Identity=30.1526717557252, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788195, Length=235, Percent_Identity=33.1914893617021, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787690, Length=344, Percent_Identity=29.6511627906977, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1789453, Length=272, Percent_Identity=27.5735294117647, Blast_Score=83, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 78211; Mature: 78080

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKQLFALSTVLIMLLSAAVVGVFVKYRSAVELQHSAMRERDAAVALSREMASDSNGLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DNIRLYGMTGEVKYKEAYMRILDQSNGKIPRSDGSVIDFMDKVKAFGVTRQEMDALKAAK
CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
ELSNGLAVIETEVMDFIDARLQRAGSAERYRSQLDADAMQQMARLYDAEYYQWINKIAAA
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VQQFNTSLFSRTEKSVNDALATGESMSRTFFVMLGVFIVFVFALLVFLWRSLSQSIGGEP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RVIEQVAAAIAAGDLTAADKLDRTTARGVAAAMLGINDSLNLLVTEMVSSLEHIKRGNLR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
AECDEKKVRGAYRELLASTNKLMATIVAYFDLIATPLMCIDSGYDILFMNKKGAEMAGKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHCCCC
PQQVRGTKCHDHFRTAACRTGSCICDLAMKAHDVTSGETVANPAGKELLVSFSAAPILDE
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCC
NGAVIGAFEQIFDETAIKSGQRKMQQLAGNATNIADRLASAAEELSSQVEQSSTGSDVQR
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ERMGETATAMEEMNATVLEVAQNASHAADNAEGSRTRAHEGSTVVGLLIESIRQAERAAR
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GLKEHMTELGQQAEGIGGIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHCCCCCCCHHHHHHHHHH
LAEKTMVATSEVSSVVNSIQNGTRASIASTDDAVNAIASSTEHATNSQGKLAEIVNLAET
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TADQVRAIATSAEEQSAVADEITRSADEVNQIALDVSQAMQQSTQAVRELAELATELQTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISELTAAR
HHHHHCCC
>Mature Secondary Structure 
SLKQLFALSTVLIMLLSAAVVGVFVKYRSAVELQHSAMRERDAAVALSREMASDSNGLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DNIRLYGMTGEVKYKEAYMRILDQSNGKIPRSDGSVIDFMDKVKAFGVTRQEMDALKAAK
CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
ELSNGLAVIETEVMDFIDARLQRAGSAERYRSQLDADAMQQMARLYDAEYYQWINKIAAA
HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
VQQFNTSLFSRTEKSVNDALATGESMSRTFFVMLGVFIVFVFALLVFLWRSLSQSIGGEP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RVIEQVAAAIAAGDLTAADKLDRTTARGVAAAMLGINDSLNLLVTEMVSSLEHIKRGNLR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
AECDEKKVRGAYRELLASTNKLMATIVAYFDLIATPLMCIDSGYDILFMNKKGAEMAGKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHCCCC
PQQVRGTKCHDHFRTAACRTGSCICDLAMKAHDVTSGETVANPAGKELLVSFSAAPILDE
HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCC
NGAVIGAFEQIFDETAIKSGQRKMQQLAGNATNIADRLASAAEELSSQVEQSSTGSDVQR
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ERMGETATAMEEMNATVLEVAQNASHAADNAEGSRTRAHEGSTVVGLLIESIRQAERAAR
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GLKEHMTELGQQAEGIGGIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHCCCCCCCHHHHHHHHHH
LAEKTMVATSEVSSVVNSIQNGTRASIASTDDAVNAIASSTEHATNSQGKLAEIVNLAET
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TADQVRAIATSAEEQSAVADEITRSADEVNQIALDVSQAMQQSTQAVRELAELATELQTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISELTAAR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]