| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is rbpE [H]
Identifier: 78356222
GI number: 78356222
Start: 1203224
End: 1203568
Strand: Reverse
Name: rbpE [H]
Synonym: Dde_1175
Alternate gene names: 78356222
Gene position: 1203568-1203224 (Counterclockwise)
Preceding gene: 78356223
Following gene: 78356219
Centisome position: 32.27
GC content: 61.16
Gene sequence:
>345_bases ATGAACATTTATGTTGGCAACCTTTCTTACCAGATGTCCGAAGACGACCTGCGTGGAGCCTTTGAAGAGTTCGGCGCTGT CGACAAGGTCCGCATCATCACTGACCACGACACTGGTCGTTCCAAAGGCTTCGGCTTTGTAGAAATGGCCGAAGACTCTG AAGCCAACGCTGCTATCGAAGCCCTGAACGGCCGCGAAATGGGCGGTCGCTCCATCACCGTGAACGAAGCTCGTCCTCGT CCCGAACGCTCCGGCGGCGGTGGCGGCGGCTTCCGTCGCAGCGGCGGTGGCGGCGGCTACGGCAACCGTGGCGGACAGGG CGGCGGCTACGGCCGTCGTTACTAA
Upstream 100 bases:
>100_bases TACCGCTAGGGTGTGTGTGCACCCCGGGCTGTCTGGCTTCGCCATGGACTGACTCTGGAATTTTAGATTAACGAATGGCG AAGTGTGAGGATAAACCCTG
Downstream 100 bases:
>100_bases TCCGTACCGCCAGCATCTGCACCGCAGGTGCCGCGCGGCGTAATGCGCACACTCCCCCGCACCGGCAACGGTGCGGGGCT TTTTTTTGCGCGCCGGACTT
Product: RNA-binding region RNP-1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 114; Mature: 114
Protein sequence:
>114_residues MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIEALNGREMGGRSITVNEARPR PERSGGGGGGFRRSGGGGGYGNRGGQGGGYGRRY
Sequences:
>Translated_114_residues MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIEALNGREMGGRSITVNEARPR PERSGGGGGGFRRSGGGGGYGNRGGQGGGYGRRY >Mature_114_residues MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIEALNGREMGGRSITVNEARPR PERSGGGGGGFRRSGGGGGYGNRGGQGGGYGRRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI116734696, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=5e-16, Organism=Homo sapiens, GI116734694, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=5e-16, Organism=Homo sapiens, GI116734698, Length=74, Percent_Identity=47.2972972972973, Blast_Score=79, Evalue=7e-16, Organism=Homo sapiens, GI35493811, Length=88, Percent_Identity=39.7727272727273, Blast_Score=78, Evalue=2e-15, Organism=Homo sapiens, GI4757926, Length=88, Percent_Identity=39.7727272727273, Blast_Score=78, Evalue=2e-15, Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=36.5853658536585, Blast_Score=66, Evalue=4e-12, Organism=Homo sapiens, GI188219591, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI188219593, Length=80, Percent_Identity=37.5, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=36.5853658536585, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI4507499, Length=80, Percent_Identity=37.5, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI77695912, Length=80, Percent_Identity=37.5, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI208431836, Length=84, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI4502847, Length=89, Percent_Identity=37.0786516853933, Blast_Score=63, Evalue=5e-11, Organism=Homo sapiens, GI4504715, Length=84, Percent_Identity=35.7142857142857, Blast_Score=63, Evalue=6e-11, Organism=Homo sapiens, GI208431833, Length=84, Percent_Identity=35.7142857142857, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=43.75, Blast_Score=75, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=44.1558441558442, Blast_Score=71, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=71, Evalue=1e-13, Organism=Caenorhabditis elegans, GI32564506, Length=81, Percent_Identity=40.7407407407407, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI32564504, Length=81, Percent_Identity=40.7407407407407, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531963, Length=81, Percent_Identity=40.7407407407407, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17531965, Length=81, Percent_Identity=40.7407407407407, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25141353, Length=73, Percent_Identity=42.4657534246575, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17510027, Length=73, Percent_Identity=42.4657534246575, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115532084, Length=80, Percent_Identity=41.25, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510025, Length=73, Percent_Identity=42.4657534246575, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17537143, Length=81, Percent_Identity=37.037037037037, Blast_Score=62, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322195, Length=82, Percent_Identity=34.1463414634146, Blast_Score=60, Evalue=8e-11, Organism=Drosophila melanogaster, GI24582417, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI45550943, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24582419, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24582423, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24582421, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=47.2972972972973, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI24650782, Length=83, Percent_Identity=43.3734939759036, Blast_Score=75, Evalue=6e-15, Organism=Drosophila melanogaster, GI161078702, Length=83, Percent_Identity=43.3734939759036, Blast_Score=75, Evalue=6e-15, Organism=Drosophila melanogaster, GI281362714, Length=83, Percent_Identity=43.3734939759036, Blast_Score=75, Evalue=6e-15, Organism=Drosophila melanogaster, GI161078704, Length=80, Percent_Identity=42.5, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=38.1578947368421, Blast_Score=69, Evalue=4e-13, Organism=Drosophila melanogaster, GI24654797, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI45552715, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654810, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654800, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654793, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654807, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI17136378, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654804, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24649519, Length=74, Percent_Identity=43.2432432432432, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649515, Length=74, Percent_Identity=43.2432432432432, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649517, Length=74, Percent_Identity=43.2432432432432, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649513, Length=74, Percent_Identity=43.2432432432432, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI281365444, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281365442, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281365440, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281365438, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281365436, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281365434, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24655233, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24655242, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24655237, Length=80, Percent_Identity=38.75, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=38.961038961039, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330652, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI62471589, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549692, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549690, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330653, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549688, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549694, Length=86, Percent_Identity=39.5348837209302, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24655228, Length=80, Percent_Identity=38.75, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI281362719, Length=80, Percent_Identity=40, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI281362717, Length=80, Percent_Identity=40, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 12058; Mature: 12058
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIE CEEEECCCEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCEEE ALNGREMGGRSITVNEARPRPERSGGGGGGFRRSGGGGGYGNRGGQGGGYGRRY ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIE CEEEECCCEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCEEE ALNGREMGGRSITVNEARPRPERSGGGGGGFRRSGGGGGYGNRGGQGGGYGRRY ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]