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The map label for this gene is ycdC [C]

Identifier: 78356007

GI number: 78356007

Start: 984363

End: 984983

Strand: Direct

Name: ycdC [C]

Synonym: Dde_0960

Alternate gene names: 78356007

Gene position: 984363-984983 (Clockwise)

Preceding gene: 78356006

Following gene: 78356008

Centisome position: 26.39

GC content: 50.56

Gene sequence:

>621_bases
ATGCAAGATGAGAAGCTCCCACGTCGGGAAAGAGAAAAACGCAGACATCGTCGGCAGATGCTTGCCGCTGCACTCGAGCT
TTTCTCGAAGAAAGGATACCACAACGTATCCATGCACGAGATTGCAGAAAGAGCAGAGTTTGCCATCGGAACGCTTTACA
AATTCTTCAAGAACAAGGAGCACCTCTACAAGGCCCTCATGATGGAAAAGGCAGCGGAATATCATCATACCCTGAGCGGA
GTCCTTTCGAGGGAAGGTGACGTCCTGACTATTCTCAAAGACTACATTTCCGCTAAAGCGGGGATCTTTGCCGATGACGT
TGCCACGTTGCGGCTCTATTTTGCTGAAACGCGGGGTGCGAGTTTCAACATCAAGGCCGGTCTCGATCAGGACATTCGCA
AGCTTTATGACGAACTGGTAGAGCAACTGGCTTCGACACTGGAAAAAGGTATTCGCAAAAACGTGCTTCGCGATCTGAAC
CCCTACTATATGGCCGTGGCCCTGGAGGGAATCACCAACGCTTTTCTCTTCTGTTGGCTGGAAGATCCGGAACGGCATTC
ATACAAGGCGAATGCCCCGGTGATCAGTGACATGTTTCTCAAAGGGGTGATGGCCGAATGA

Upstream 100 bases:

>100_bases
AGGAGCCAACGCGCGTATTGGTTAGAATATAACGTCATAAAATGAACATGCCGTCACGTTTTTAAATGTTCTATGCTGCC
AAGGAAACGGAGGTCAGGCA

Downstream 100 bases:

>100_bases
AAAAAGCCTTAAGGATAACAGCTCGCACCATGGTTATGCTTCTGGTGGGAGGTGGATTGCTGCTGACAGCGGGTTGTATT
TCTATTAGCGCTGCCGCCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIGTLYKFFKNKEHLYKALMMEKAAEYHHTLSG
VLSREGDVLTILKDYISAKAGIFADDVATLRLYFAETRGASFNIKAGLDQDIRKLYDELVEQLASTLEKGIRKNVLRDLN
PYYMAVALEGITNAFLFCWLEDPERHSYKANAPVISDMFLKGVMAE

Sequences:

>Translated_206_residues
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIGTLYKFFKNKEHLYKALMMEKAAEYHHTLSG
VLSREGDVLTILKDYISAKAGIFADDVATLRLYFAETRGASFNIKAGLDQDIRKLYDELVEQLASTLEKGIRKNVLRDLN
PYYMAVALEGITNAFLFCWLEDPERHSYKANAPVISDMFLKGVMAE
>Mature_206_residues
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIGTLYKFFKNKEHLYKALMMEKAAEYHHTLSG
VLSREGDVLTILKDYISAKAGIFADDVATLRLYFAETRGASFNIKAGLDQDIRKLYDELVEQLASTLEKGIRKNVLRDLN
PYYMAVALEGITNAFLFCWLEDPERHSYKANAPVISDMFLKGVMAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23798; Mature: 23798

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIGTLYKFFKNKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
HLYKALMMEKAAEYHHTLSGVLSREGDVLTILKDYISAKAGIFADDVATLRLYFAETRGA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SFNIKAGLDQDIRKLYDELVEQLASTLEKGIRKNVLRDLNPYYMAVALEGITNAFLFCWL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
EDPERHSYKANAPVISDMFLKGVMAE
CCCHHCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIGTLYKFFKNKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
HLYKALMMEKAAEYHHTLSGVLSREGDVLTILKDYISAKAGIFADDVATLRLYFAETRGA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SFNIKAGLDQDIRKLYDELVEQLASTLEKGIRKNVLRDLNPYYMAVALEGITNAFLFCWL
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
EDPERHSYKANAPVISDMFLKGVMAE
CCCHHCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA