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The map label for this gene is yrrC [H]

Identifier: 78355953

GI number: 78355953

Start: 929969

End: 932191

Strand: Direct

Name: yrrC [H]

Synonym: Dde_0906

Alternate gene names: 78355953

Gene position: 929969-932191 (Clockwise)

Preceding gene: 78355952

Following gene: 78355954

Centisome position: 24.93

GC content: 52.95

Gene sequence:

>2223_bases
ATGCCAAGAAAAACAAACTCCCCGGCAAAACTCCGGGGAAGAATAGAGAGAGTTTATTATGCCGGGCCAAAGTTTTCCGC
AGGCCGTTTGCTCACCGCCACAGGAGAGGAAATCCAGTTTGCCGGAAATCTGTTTGCCCGTGAAAATCAGCCCGTGGTCC
TTTTGGGGACGTGGGCCACCCATCCGAAATATGGTCGCCAGTTCAAGGTCGATGCCATGGAGCACGATCTTGATCTGAAC
CCGGAAGGATTGATTCACTATCTGGCCAATCACCCTGACATCAAAGGGATTGGTCCTGCCAAAGCCCGCCTTATCGTTGA
AGAGTTCGGCGATTCTTTCGAGGAGACCCTGATTGAATCCCCGGAGCTCATCGCATCAAAAGCCAGAATTTCCCTCGATG
CCGCTAATCGTCTTAAGGATGAATGGTGTAAAAACCGCAGCGTCAATGCCGTCCTGGCATGGCTCTCCGCCTTTGGGTTG
ACCCACCATCAGGTAACCACGCTGGTCGATAAGCTGGGCGGGAACTGTCTGGAAATCCTCAAAGCCGATCCTTACATCCT
CATCCGGGAACTGCGTGGATTCGGCTTCAAGAAAGTCGACAAGATTGCCCGCAAACTGGGTACGCCCAAAGACCACACCC
CAAGAATCCGTGCCGGTATCCAGTACTGCATGCACGAGGCGCTGGATCAGGGAAACTGCTGGGTCGAATACGAGGACCTA
GTTGATCAGGCCAATCTGCTGCTGGTGATGGATAATCTGGACAGCCGCATCCGTATCGAAGCCTCGCTGGACAATCTGAT
CAGTGAAAGACTGCTTTCCTGTGAATCACACGCGGGACGTTTTCTGGTGGCGCTTTCCGATATCCTGAAAATGGAACAGG
ATATCGCCGCCATTTTCACCAAGGCGGATGCCTCGAACCCTCATTTCAAATCGACCCGCAATCTACAGAAGCTGATTCTT
CGTCAGGCGGAAACGCTCAATGAAAAGCAGCTCGAAGCGGTTCACTCTGCTTTGCAGCACTCCATCAGTCTGATATCCGG
TGGAGCCGGATCGGGAAAAAGCTACACCGTATCGGTCATCAACGCGGTATGTGAAGAGTGCGATCTGGAAGTGGTTCTTT
CCGCTCCGACAGGCAAAGCGGCCAAAAGGCTCGAGGAAGTGAGCGGTCGCACCGGAACCACAATCCATCGACTGCTTGGC
TATGACGGCAAGTCCTTTTCAAAGGACAGTAACAATCCCATCGATGCCGACATCCTGATCATCGATGAGTTTTCCATGGT
GGATGTTTCTCTGGCATGGCACCTTTTCAATGCGGTGGACTTTGCCAGAACGGCCATTGTCATTGTGGGAGACCATAACC
AGCTACCGCCGGTCGGACCGGGAAATATCCTTCGGGATCTGATTCACTCGAATGCCATCCCCACGGTCATTCTGGATAAG
GTGGTCAGGCAGGCCGGTGTGTTGAAGGAAAACAGCACCGCCATTCTCAAAGGCGAAGTTAGGAAAACCAGTGATGCCAG
TACACAGGGCTGCCGGGATTGGTATCTGGCGGATCAGTTCACCGACCCGGGTGCTGCTCGAAATTTCCTGCTGGATCTCT
TTGACAAGCGGCTCGATGCCCTTGGATTTGATCTAATCAAGGATGTGCAGGTGTTGACTCCAACGCACAAGGGGCCGCTG
GGAACCAAGTCACTCAATGAAGATTTGCAGCGGCTTATCCAAAAGCGTCTCTGGAATGTGAGCGTTCCGGAAACGCAACT
GGGTCGCCGGTCGCCATTTTTGAAACATGACAAGGTCATTCAGACCCGCAACAACTACGACCTGAACGTCATGAACGGTG
CCATCGGTCATGTGGTCGATGTGCTGCCCAACGGCACGCTGCTGATTGATTTTGAGGGTGTGGCAGTTGAGATTGAAAAA
GGTTCACCGAACCTTCAGGACATCCAGCTGGCCTATGCGCTGACAATCCACAAAACCCAGGGATCGGAATTTCCTTGCGC
TGTTGTGGTGGTCCATAAGGCGCACTCGTTCATGCATCATCGCAACCTGCTGTACACCGGTGTCACCCGTGCCCGCAAGA
CTGCGATTGTACTCGGTGACCGCTGGGGCATCCGCAATTGCGCCAAGAAATGTCAGGTGGATGACCGCAAGACCTTTCTT
TCCATTCTGTTGAACAATTTGAATTGCCCTGAAGAGCAGTCAGCTTGTGCGGGGGCATTATGA

Upstream 100 bases:

>100_bases
TCATCGACTTCGGTGTGCCCGTTTATTTCTGTTCAGACCGTCAGGCAGCCTGCCGGTTTGTTGAAGAGTTTTTAATGCGC
TTTCACCGGAGGTTCGCTCA

Downstream 100 bases:

>100_bases
GCATGGGCGGTTCAGACAATGTCAGAGAATACTACCGCCTGATAACCGAGCTCGATATCGGAGATGTGGCAAGGGATCTT
CTGGCCGGAAGGATCACACA

Product: ATP-dependent DNA helicase RecD/TraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 739

Protein sequence:

>740_residues
MPRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQPVVLLGTWATHPKYGRQFKVDAMEHDLDLN
PEGLIHYLANHPDIKGIGPAKARLIVEEFGDSFEETLIESPELIASKARISLDAANRLKDEWCKNRSVNAVLAWLSAFGL
THHQVTTLVDKLGGNCLEILKADPYILIRELRGFGFKKVDKIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDL
VDQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFTKADASNPHFKSTRNLQKLIL
RQAETLNEKQLEAVHSALQHSISLISGGAGSGKSYTVSVINAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLG
YDGKSFSKDSNNPIDADILIIDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIHSNAIPTVILDK
VVRQAGVLKENSTAILKGEVRKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDALGFDLIKDVQVLTPTHKGPL
GTKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVIQTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEK
GSPNLQDIQLAYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFL
SILLNNLNCPEEQSACAGAL

Sequences:

>Translated_740_residues
MPRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQPVVLLGTWATHPKYGRQFKVDAMEHDLDLN
PEGLIHYLANHPDIKGIGPAKARLIVEEFGDSFEETLIESPELIASKARISLDAANRLKDEWCKNRSVNAVLAWLSAFGL
THHQVTTLVDKLGGNCLEILKADPYILIRELRGFGFKKVDKIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDL
VDQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFTKADASNPHFKSTRNLQKLIL
RQAETLNEKQLEAVHSALQHSISLISGGAGSGKSYTVSVINAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLG
YDGKSFSKDSNNPIDADILIIDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIHSNAIPTVILDK
VVRQAGVLKENSTAILKGEVRKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDALGFDLIKDVQVLTPTHKGPL
GTKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVIQTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEK
GSPNLQDIQLAYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFL
SILLNNLNCPEEQSACAGAL
>Mature_739_residues
PRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQPVVLLGTWATHPKYGRQFKVDAMEHDLDLNP
EGLIHYLANHPDIKGIGPAKARLIVEEFGDSFEETLIESPELIASKARISLDAANRLKDEWCKNRSVNAVLAWLSAFGLT
HHQVTTLVDKLGGNCLEILKADPYILIRELRGFGFKKVDKIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDLV
DQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFTKADASNPHFKSTRNLQKLILR
QAETLNEKQLEAVHSALQHSISLISGGAGSGKSYTVSVINAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLGY
DGKSFSKDSNNPIDADILIIDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIHSNAIPTVILDKV
VRQAGVLKENSTAILKGEVRKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDALGFDLIKDVQVLTPTHKGPLG
TKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVIQTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEKG
SPNLQDIQLAYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFLS
ILLNNLNCPEEQSACAGAL

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=445, Percent_Identity=27.6404494382022, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 81983; Mature: 81852

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQPVVLLGTWAT
CCCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCEEECCCEEECCCCCEEEEEECCC
HPKYGRQFKVDAMEHDLDLNPEGLIHYLANHPDIKGIGPAKARLIVEEFGDSFEETLIES
CCCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC
PELIASKARISLDAANRLKDEWCKNRSVNAVLAWLSAFGLTHHQVTTLVDKLGGNCLEIL
CHHHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH
KADPYILIRELRGFGFKKVDKIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDL
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHH
VDQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFT
HCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
KADASNPHFKSTRNLQKLILRQAETLNEKQLEAVHSALQHSISLISGGAGSGKSYTVSVI
HCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
NAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLGYDGKSFSKDSNNPIDADILI
HHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEE
IDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIHSNAIPTVILDK
EECCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
VVRQAGVLKENSTAILKGEVRKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDA
HHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHECCCCCCCCHHHHHHHHHHHHHHHHH
LGFDLIKDVQVLTPTHKGPLGTKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVI
HHHHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCE
QTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEKGSPNLQDIQLAYALTIHKTQ
ECCCCCCEEEECCHHHHHHHHCCCCEEEEEECCEEEEEECCCCCHHHEEEEEEEEEEECC
GSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFL
CCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHH
SILLNNLNCPEEQSACAGAL
HHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure 
PRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQPVVLLGTWAT
CCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCEEECCCEEECCCCCEEEEEECCC
HPKYGRQFKVDAMEHDLDLNPEGLIHYLANHPDIKGIGPAKARLIVEEFGDSFEETLIES
CCCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC
PELIASKARISLDAANRLKDEWCKNRSVNAVLAWLSAFGLTHHQVTTLVDKLGGNCLEIL
CHHHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHH
KADPYILIRELRGFGFKKVDKIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDL
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHH
VDQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFT
HCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
KADASNPHFKSTRNLQKLILRQAETLNEKQLEAVHSALQHSISLISGGAGSGKSYTVSVI
HCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
NAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLGYDGKSFSKDSNNPIDADILI
HHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEE
IDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIHSNAIPTVILDK
EECCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
VVRQAGVLKENSTAILKGEVRKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDA
HHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHECCCCCCCCHHHHHHHHHHHHHHHHH
LGFDLIKDVQVLTPTHKGPLGTKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVI
HHHHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCE
QTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEKGSPNLQDIQLAYALTIHKTQ
ECCCCCCEEEECCHHHHHHHHCCCCEEEEEECCEEEEEECCCCCHHHEEEEEEEEEEECC
GSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFL
CCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHH
SILLNNLNCPEEQSACAGAL
HHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]