| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is psrA [H]
Identifier: 78355729
GI number: 78355729
Start: 698001
End: 700196
Strand: Reverse
Name: psrA [H]
Synonym: Dde_0682
Alternate gene names: 78355729
Gene position: 700196-698001 (Counterclockwise)
Preceding gene: 78355730
Following gene: 78355728
Centisome position: 18.77
GC content: 58.79
Gene sequence:
>2196_bases ATGTCGGACATCAGGCAGCCCAGACTGACCAGACGGGGCTTTTTCAAGGCCGCCGGGCTGGCCGCAGCGGCAGGAGCCGG AGCGCCTGTGCTCGGTTCGCTGACACCGGCCGTACGCTCGGCAAAGGCCGCAGACCCCGGTTTCACCTCACACTATTCCG CCTGCGACATGTGCTTTAATAAATGCGGGGTTATCGCCCGTGTGCAGGACGGTGTGGTTACCAAACTCGACCCGAACCCC AAATTTCTTAAATCGCGCGGCATGCTGTGTGCCCGCGGCAATGCAGGCATTGCTCAGTTGTATGATTCGGACCGGCTGAA ATACCCCCTGCTGCGCGCCGGAAAGCGCGGAGAAGGCCGCTGGAAAAGGATTCCATGGGATGAGGCTCTGGACATGGCGG CCGAACGCATGCAGGAGGTACGCAGCAAGTATACCCCCTGCGGTATGCTGTTCACTGCCGGAGCGGATCTGCAGTCGCAG TTTGTAAGCCGTTTTGCCGAGGTGTTCGGCTCGTACAACATCACTTCGCACGAATCCCTGTGCCTGCTTTCCAACAACCG CGCATATCTTGATACCTTCGGCGAGACTCCGTACGCCGACGTGCTTAACAGCCGTTACATCATCATGGCCGGGGCCAACA GGTTCGAGGCGCTGGTCACCCCCGACTCCATGGACATGATGACCGCCCTGCGCAGCGGCTGCAAACTGGTTGTGCTGGAT CCCCGACACACCAAAACAGCAGCACTGGCAAGTGAATGGCACCCCATACGTCCCGGAACAGACATGGCGTTCATGCTTGC AGTCGCCCATGTCATCATTGCTGAAAAATTATACGATGAAGAATGGATACGCGAAAAAACATATGGTCTGGAGCAGCTGG CCGGACATGTGCGGCCCTACACACCGCAATGGGCCGAACAAGAATGCGGCATTCCTGCGCAGGACATAGCCCGCATGGCC CGGGAACTGGCTGCCGCGGCACCTGCAGCCATGGTGTACCCCGGACGGCGCACATCCGATTACAGCAATTCCACCCAGAT CCGCCGCAGCTTTGCCATAGTCAACGCCCTGCTGGGCAACTGGGATAAACCCGGCGGCCTGCTTGCCGCACGGGCCGTGG GGTTGAAAGGTGTACCCTATGATGCCCCGTGGTACGACGAAAACCCCTTTGAACGCGTGGACGCAGGCATTGTTCCGGGC CTGTTTGAACATGACGGCTCGTTTGTACTGACCCGCGAGGCGGTGCTCAGCGCAGAGCCTTATCCGCTCAAAGGCTGGTT CGTGTACAAGACTAACCCCATGGTCAATGCTCCCGACCGCGCGCGCACCATTGAAATGTGCAACGCCATGGACTTCATGG TGGTTGTCGATATCGCCATGAGCGACACCGCCTGCATGGCAGACCTTGTCCTGCCTGCTCCCGGTTATCTTGAAAGACAG GACCCGGCATCAGGACTTCAGGGGTCATCGGCCTGCGCCTGTGTGGTGCAGCGCGACCCCGTTGTACCTGCGCTGTACGA ATCGCGCCCCGTGTTTGAAATAGTCAAGGAACTGGCCGGAAGGCTTGATCTGGCGGAATACTTTGACTTCACTATAGAAG AATACCGCGCGAAACAGCTTGCCGACCTGCCGGATGCCCCGCAGGCTCTTGAGCGTGACGGCGTGTATTACAACCCCAGC AAGGTCTACGGCATATACGAAGACCGCATATACAAAACATTCAGCCACAAAATAGAGCTGTACAACCAGCGGTACGAAAG CATGGGGCTGGACCCCATGCCCGTCTACACGCCCCCGGCCGCAGCGCCGCAGGGCCGATTCAGGCTGATCATCGGACGCA ACGCCTGTGTCACGCACGGTTCCACCAACAACAATGCCCTGATTCACGAACTGGTACCCGAAAACACACTGTGGATTCAT CCGCAATCAGCAACGCCGCTGGGCATACGCGACGGCGACATGGTCGAAGTTTCGTCGCCTGCGGGCAAAGGCACCATAAA GGCGGAAGTCACCGAACGCATCCGCCCCGACTGTGTGTACATGCTCACAGGCTTCGGCACCATTTCTGACGGCCTGAGCC GTATCAAAGGTGTGGGAGCCAGCATAGCCGCCCTGCTGGAAGGGCACTATGACAGTGTTTCCGGCAATGCCGCCATGCAC GAAACCTTTGTATCCGTCAGCGGGAGGGCATCATGA
Upstream 100 bases:
>100_bases GGCGAAGTGCAGCTAGGCAGCCTCCGGATACCGGACTGTGCCACGGCAGGGCGCAGTCCGGTACGCACAGGGGCGCACAA GCAACAACAGGAGGTTATCC
Downstream 100 bases:
>100_bases CCCAGCAGTTCGCCATGGTTATCGATTCCGCCAGATGCATCGACTGCAAAGCGTGCGTGGTTTCCTGCAAAGTGGCAAAC AATGTTCCGGCAGGATTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Sulfur reductase chain A [H]
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MSDIRQPRLTRRGFFKAAGLAAAAGAGAPVLGSLTPAVRSAKAADPGFTSHYSACDMCFNKCGVIARVQDGVVTKLDPNP KFLKSRGMLCARGNAGIAQLYDSDRLKYPLLRAGKRGEGRWKRIPWDEALDMAAERMQEVRSKYTPCGMLFTAGADLQSQ FVSRFAEVFGSYNITSHESLCLLSNNRAYLDTFGETPYADVLNSRYIIMAGANRFEALVTPDSMDMMTALRSGCKLVVLD PRHTKTAALASEWHPIRPGTDMAFMLAVAHVIIAEKLYDEEWIREKTYGLEQLAGHVRPYTPQWAEQECGIPAQDIARMA RELAAAAPAAMVYPGRRTSDYSNSTQIRRSFAIVNALLGNWDKPGGLLAARAVGLKGVPYDAPWYDENPFERVDAGIVPG LFEHDGSFVLTREAVLSAEPYPLKGWFVYKTNPMVNAPDRARTIEMCNAMDFMVVVDIAMSDTACMADLVLPAPGYLERQ DPASGLQGSSACACVVQRDPVVPALYESRPVFEIVKELAGRLDLAEYFDFTIEEYRAKQLADLPDAPQALERDGVYYNPS KVYGIYEDRIYKTFSHKIELYNQRYESMGLDPMPVYTPPAAAPQGRFRLIIGRNACVTHGSTNNNALIHELVPENTLWIH PQSATPLGIRDGDMVEVSSPAGKGTIKAEVTERIRPDCVYMLTGFGTISDGLSRIKGVGASIAALLEGHYDSVSGNAAMH ETFVSVSGRAS
Sequences:
>Translated_731_residues MSDIRQPRLTRRGFFKAAGLAAAAGAGAPVLGSLTPAVRSAKAADPGFTSHYSACDMCFNKCGVIARVQDGVVTKLDPNP KFLKSRGMLCARGNAGIAQLYDSDRLKYPLLRAGKRGEGRWKRIPWDEALDMAAERMQEVRSKYTPCGMLFTAGADLQSQ FVSRFAEVFGSYNITSHESLCLLSNNRAYLDTFGETPYADVLNSRYIIMAGANRFEALVTPDSMDMMTALRSGCKLVVLD PRHTKTAALASEWHPIRPGTDMAFMLAVAHVIIAEKLYDEEWIREKTYGLEQLAGHVRPYTPQWAEQECGIPAQDIARMA RELAAAAPAAMVYPGRRTSDYSNSTQIRRSFAIVNALLGNWDKPGGLLAARAVGLKGVPYDAPWYDENPFERVDAGIVPG LFEHDGSFVLTREAVLSAEPYPLKGWFVYKTNPMVNAPDRARTIEMCNAMDFMVVVDIAMSDTACMADLVLPAPGYLERQ DPASGLQGSSACACVVQRDPVVPALYESRPVFEIVKELAGRLDLAEYFDFTIEEYRAKQLADLPDAPQALERDGVYYNPS KVYGIYEDRIYKTFSHKIELYNQRYESMGLDPMPVYTPPAAAPQGRFRLIIGRNACVTHGSTNNNALIHELVPENTLWIH PQSATPLGIRDGDMVEVSSPAGKGTIKAEVTERIRPDCVYMLTGFGTISDGLSRIKGVGASIAALLEGHYDSVSGNAAMH ETFVSVSGRAS >Mature_730_residues SDIRQPRLTRRGFFKAAGLAAAAGAGAPVLGSLTPAVRSAKAADPGFTSHYSACDMCFNKCGVIARVQDGVVTKLDPNPK FLKSRGMLCARGNAGIAQLYDSDRLKYPLLRAGKRGEGRWKRIPWDEALDMAAERMQEVRSKYTPCGMLFTAGADLQSQF VSRFAEVFGSYNITSHESLCLLSNNRAYLDTFGETPYADVLNSRYIIMAGANRFEALVTPDSMDMMTALRSGCKLVVLDP RHTKTAALASEWHPIRPGTDMAFMLAVAHVIIAEKLYDEEWIREKTYGLEQLAGHVRPYTPQWAEQECGIPAQDIARMAR ELAAAAPAAMVYPGRRTSDYSNSTQIRRSFAIVNALLGNWDKPGGLLAARAVGLKGVPYDAPWYDENPFERVDAGIVPGL FEHDGSFVLTREAVLSAEPYPLKGWFVYKTNPMVNAPDRARTIEMCNAMDFMVVVDIAMSDTACMADLVLPAPGYLERQD PASGLQGSSACACVVQRDPVVPALYESRPVFEIVKELAGRLDLAEYFDFTIEEYRAKQLADLPDAPQALERDGVYYNPSK VYGIYEDRIYKTFSHKIELYNQRYESMGLDPMPVYTPPAAAPQGRFRLIIGRNACVTHGSTNNNALIHELVPENTLWIHP QSATPLGIRDGDMVEVSSPAGKGTIKAEVTERIRPDCVYMLTGFGTISDGLSRIKGVGASIAALLEGHYDSVSGNAAMHE TFVSVSGRAS
Specific function: Component of the phosphorylative electron transport system with polysulfide as the terminal acceptor [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI171474008, Length=813, Percent_Identity=26.1992619926199, Blast_Score=211, Evalue=2e-55, Organism=Escherichia coli, GI1787870, Length=769, Percent_Identity=27.6983094928479, Blast_Score=202, Evalue=6e-53, Organism=Escherichia coli, GI87081797, Length=765, Percent_Identity=26.6666666666667, Blast_Score=201, Evalue=1e-52, Organism=Escherichia coli, GI3868721, Length=666, Percent_Identity=24.024024024024, Blast_Score=136, Evalue=4e-33, Organism=Escherichia coli, GI145693196, Length=692, Percent_Identity=23.4104046242775, Blast_Score=122, Evalue=9e-29, Organism=Escherichia coli, GI3868720, Length=448, Percent_Identity=23.8839285714286, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1787231, Length=507, Percent_Identity=23.4714003944773, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI3868719, Length=453, Percent_Identity=23.1788079470199, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI87081994, Length=796, Percent_Identity=21.608040201005, Blast_Score=100, Evalue=6e-22, Organism=Escherichia coli, GI1788534, Length=314, Percent_Identity=26.1146496815287, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 - InterPro: IPR019546 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding; PF10518 TAT_signal [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 80203; Mature: 80072
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIRQPRLTRRGFFKAAGLAAAAGAGAPVLGSLTPAVRSAKAADPGFTSHYSACDMCFN CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHH KCGVIARVQDGVVTKLDPNPKFLKSRGMLCARGNAGIAQLYDSDRLKYPLLRAGKRGEGR HCCEEEEECCCEEEEECCCHHHHHHCCCEEECCCCCHHHHHCCCCCCCHHHHCCCCCCCC WKRIPWDEALDMAAERMQEVRSKYTPCGMLFTAGADLQSQFVSRFAEVFGSYNITSHESL CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCE CLLSNNRAYLDTFGETPYADVLNSRYIIMAGANRFEALVTPDSMDMMTALRSGCKLVVLD EEEECCCEEEECCCCCCHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHCCCEEEEEC PRHTKTAALASEWHPIRPGTDMAFMLAVAHVIIAEKLYDEEWIREKTYGLEQLAGHVRPY CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC TPQWAEQECGIPAQDIARMARELAAAAPAAMVYPGRRTSDYSNSTQIRRSFAIVNALLGN CCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC WDKPGGLLAARAVGLKGVPYDAPWYDENPFERVDAGIVPGLFEHDGSFVLTREAVLSAEP CCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHCCCCEEEEEHHHHCCCC YPLKGWFVYKTNPMVNAPDRARTIEMCNAMDFMVVVDIAMSDTACMADLVLPAPGYLERQ CCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHCCCCCCCCCC DPASGLQGSSACACVVQRDPVVPALYESRPVFEIVKELAGRLDLAEYFDFTIEEYRAKQL CCCCCCCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ADLPDAPQALERDGVYYNPSKVYGIYEDRIYKTFSHKIELYNQRYESMGLDPMPVYTPPA HCCCCCCHHHHCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AAPQGRFRLIIGRNACVTHGSTNNNALIHELVPENTLWIHPQSATPLGIRDGDMVEVSSP CCCCCCEEEEEECCEEEECCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEECCC AGKGTIKAEVTERIRPDCVYMLTGFGTISDGLSRIKGVGASIAALLEGHYDSVSGNAAMH CCCCEEEHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH ETFVSVSGRAS HHHHCCCCCCC >Mature Secondary Structure SDIRQPRLTRRGFFKAAGLAAAAGAGAPVLGSLTPAVRSAKAADPGFTSHYSACDMCFN CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHH KCGVIARVQDGVVTKLDPNPKFLKSRGMLCARGNAGIAQLYDSDRLKYPLLRAGKRGEGR HCCEEEEECCCEEEEECCCHHHHHHCCCEEECCCCCHHHHHCCCCCCCHHHHCCCCCCCC WKRIPWDEALDMAAERMQEVRSKYTPCGMLFTAGADLQSQFVSRFAEVFGSYNITSHESL CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCE CLLSNNRAYLDTFGETPYADVLNSRYIIMAGANRFEALVTPDSMDMMTALRSGCKLVVLD EEEECCCEEEECCCCCCHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHCCCEEEEEC PRHTKTAALASEWHPIRPGTDMAFMLAVAHVIIAEKLYDEEWIREKTYGLEQLAGHVRPY CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC TPQWAEQECGIPAQDIARMARELAAAAPAAMVYPGRRTSDYSNSTQIRRSFAIVNALLGN CCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC WDKPGGLLAARAVGLKGVPYDAPWYDENPFERVDAGIVPGLFEHDGSFVLTREAVLSAEP CCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHCCCCEEEEEHHHHCCCC YPLKGWFVYKTNPMVNAPDRARTIEMCNAMDFMVVVDIAMSDTACMADLVLPAPGYLERQ CCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHCCCCCCCCCC DPASGLQGSSACACVVQRDPVVPALYESRPVFEIVKELAGRLDLAEYFDFTIEEYRAKQL CCCCCCCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ADLPDAPQALERDGVYYNPSKVYGIYEDRIYKTFSHKIELYNQRYESMGLDPMPVYTPPA HCCCCCCHHHHCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AAPQGRFRLIIGRNACVTHGSTNNNALIHELVPENTLWIHPQSATPLGIRDGDMVEVSSP CCCCCCEEEEEECCEEEECCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEECCC AGKGTIKAEVTERIRPDCVYMLTGFGTISDGLSRIKGVGASIAALLEGHYDSVSGNAAMH CCCCEEEHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH ETFVSVSGRAS HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1597189; 14500908 [H]