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The map label for this gene is hypD2 [H]

Identifier: 78355411

GI number: 78355411

Start: 355060

End: 356151

Strand: Reverse

Name: hypD2 [H]

Synonym: Dde_0364

Alternate gene names: 78355411

Gene position: 356151-355060 (Counterclockwise)

Preceding gene: 78355415

Following gene: 78355410

Centisome position: 9.55

GC content: 61.72

Gene sequence:

>1092_bases
GTGAACTTTTCCAATGCGTTCAAAGATCCTGTGCTGTGCCGCGGGCTGCTGGACCGGCTTCGTGCCGAGACAGACGCCCC
GCTGCGTTTCATGGAAGTGTGCGGCACACATACCGTGGCCATATTCCAGAGCGGTCTGCGCCCGCTGCTGCCGGAACAGG
TCGTCCATGTGTCCGGCCCCGGGTGTCCGGTCTGTGTGACCCACGAAAGCGAGATAGCCGCCTATCTGGAACTGGCGGAA
CGCGACAAGGTGATCATCGCCACGTTCGGCGACCTTATGCGTGTTCCCGGCCCCGGTGGCAAAACACTTAAAAGCGCACA
GGCCGCCGGTGCCCGCATCGAAGTGGTCTATTCACCCGTGGACGCACTGTCACTTGCCGCTGCCCACCCGCAGTCCACGG
TGGTTTTTCTGGGCATCGGTTTTGAAACCACCACCCCCGCCGTGGCCGCCACCATCAAAACCGCAGACCGGCAGGGGCTG
AAGAATTTTCAGGTACTTTCCTTTCACAAACTGGTGCCCCCCGCTCTGGGCGCGCTGCTTTCCGACCCTGACTGTGCAGT
GGATGCTTTTCTGCTGCCGGGACATGTTTCCACCATTCTGGGCACGGCCCCGTACAACTTTGTGGCCGAACAGTTTCACA
CCCCCGGCGTGGTGGCCGGTTTTGACCCTGCCGACATTCTGCAGGCGCTGCTGCTGATGGTGCAGATGCGCCGCCGAGGC
GAATACGCCATCACCAACCAGTACAGCCGCGCGGTAAGCGACAACGGCAACCCCAAGGCGCGCAGCATCATGTACGAGGT
ATTCCGTCCTGCAGACGCGCTGTGGCGCGGCATCGGCACCATACCCGACAGCGGGCTGGTGTTCACCGACGCCTACAGAC
AATTCGACGCCATGGAACAGCAGGAACTGACCCTGCGGGACGTGCCCAACACACCCGGATGCAGATGCGGCGACGTGCTC
AAGGGCAAAATGCAGCCCGACAACTGTCCGCTGTTTGCCAAGGCCTGCACACCCGCCCGCCCCGTGGGACCGTGCATGGT
TTCCACCGAAGGAAGCTGCGCCGCCTATTTCAAATACAATATCGGGAGCTGA

Upstream 100 bases:

>100_bases
CCGCCGCACCGCGGCCCTGCCGCAACGCGCGGAAAAAACGCCCTTCTGCCGCTCCGTGCTTCTGCGGCCCCCGCACCTCT
AGAGGAAGGAAGGATACCAC

Downstream 100 bases:

>100_bases
CCCCATGACTGCAGAAACTCTGCTGCTCGATTACGGAAGCGGCGGCCGCGCCTCGCAGAGGCTTATCGCCGAGCTGTTCT
TCAAGCATTTTGACAACCCC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNFSNAFKDPVLCRGLLDRLRAETDAPLRFMEVCGTHTVAIFQSGLRPLLPEQVVHVSGPGCPVCVTHESEIAAYLELAE
RDKVIIATFGDLMRVPGPGGKTLKSAQAAGARIEVVYSPVDALSLAAAHPQSTVVFLGIGFETTTPAVAATIKTADRQGL
KNFQVLSFHKLVPPALGALLSDPDCAVDAFLLPGHVSTILGTAPYNFVAEQFHTPGVVAGFDPADILQALLLMVQMRRRG
EYAITNQYSRAVSDNGNPKARSIMYEVFRPADALWRGIGTIPDSGLVFTDAYRQFDAMEQQELTLRDVPNTPGCRCGDVL
KGKMQPDNCPLFAKACTPARPVGPCMVSTEGSCAAYFKYNIGS

Sequences:

>Translated_363_residues
MNFSNAFKDPVLCRGLLDRLRAETDAPLRFMEVCGTHTVAIFQSGLRPLLPEQVVHVSGPGCPVCVTHESEIAAYLELAE
RDKVIIATFGDLMRVPGPGGKTLKSAQAAGARIEVVYSPVDALSLAAAHPQSTVVFLGIGFETTTPAVAATIKTADRQGL
KNFQVLSFHKLVPPALGALLSDPDCAVDAFLLPGHVSTILGTAPYNFVAEQFHTPGVVAGFDPADILQALLLMVQMRRRG
EYAITNQYSRAVSDNGNPKARSIMYEVFRPADALWRGIGTIPDSGLVFTDAYRQFDAMEQQELTLRDVPNTPGCRCGDVL
KGKMQPDNCPLFAKACTPARPVGPCMVSTEGSCAAYFKYNIGS
>Mature_363_residues
MNFSNAFKDPVLCRGLLDRLRAETDAPLRFMEVCGTHTVAIFQSGLRPLLPEQVVHVSGPGCPVCVTHESEIAAYLELAE
RDKVIIATFGDLMRVPGPGGKTLKSAQAAGARIEVVYSPVDALSLAAAHPQSTVVFLGIGFETTTPAVAATIKTADRQGL
KNFQVLSFHKLVPPALGALLSDPDCAVDAFLLPGHVSTILGTAPYNFVAEQFHTPGVVAGFDPADILQALLLMVQMRRRG
EYAITNQYSRAVSDNGNPKARSIMYEVFRPADALWRGIGTIPDSGLVFTDAYRQFDAMEQQELTLRDVPNTPGCRCGDVL
KGKMQPDNCPLFAKACTPARPVGPCMVSTEGSCAAYFKYNIGS

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=367, Percent_Identity=44.9591280653951, Blast_Score=317, Evalue=8e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39017; Mature: 39017

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00936 RIBOSOMAL_L35

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSNAFKDPVLCRGLLDRLRAETDAPLRFMEVCGTHTVAIFQSGLRPLLPEQVVHVSGP
CCCCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHEEEECCC
GCPVCVTHESEIAAYLELAERDKVIIATFGDLMRVPGPGGKTLKSAQAAGARIEVVYSPV
CCCEEEECHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHCCCEEEEEECCH
DALSLAAAHPQSTVVFLGIGFETTTPAVAATIKTADRQGLKNFQVLSFHKLVPPALGALL
HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHH
SDPDCAVDAFLLPGHVSTILGTAPYNFVAEQFHTPGVVAGFDPADILQALLLMVQMRRRG
CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCC
EYAITNQYSRAVSDNGNPKARSIMYEVFRPADALWRGIGTIPDSGLVFTDAYRQFDAMEQ
CEEEHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHHH
QELTLRDVPNTPGCRCGDVLKGKMQPDNCPLFAKACTPARPVGPCMVSTEGSCAAYFKYN
HCCHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEEEEEC
IGS
CCC
>Mature Secondary Structure
MNFSNAFKDPVLCRGLLDRLRAETDAPLRFMEVCGTHTVAIFQSGLRPLLPEQVVHVSGP
CCCCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHEEEECCC
GCPVCVTHESEIAAYLELAERDKVIIATFGDLMRVPGPGGKTLKSAQAAGARIEVVYSPV
CCCEEEECHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHHHHCCCEEEEEECCH
DALSLAAAHPQSTVVFLGIGFETTTPAVAATIKTADRQGLKNFQVLSFHKLVPPALGALL
HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHH
SDPDCAVDAFLLPGHVSTILGTAPYNFVAEQFHTPGVVAGFDPADILQALLLMVQMRRRG
CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCC
EYAITNQYSRAVSDNGNPKARSIMYEVFRPADALWRGIGTIPDSGLVFTDAYRQFDAMEQ
CEEEHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHHH
QELTLRDVPNTPGCRCGDVLKGKMQPDNCPLFAKACTPARPVGPCMVSTEGSCAAYFKYN
HCCHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEEEEEC
IGS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]