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The map label for this gene is hupE [H]

Identifier: 78355410

GI number: 78355410

Start: 354033

End: 355055

Strand: Reverse

Name: hupE [H]

Synonym: Dde_0363

Alternate gene names: 78355410

Gene position: 355055-354033 (Counterclockwise)

Preceding gene: 78355411

Following gene: 78355409

Centisome position: 9.52

GC content: 61.97

Gene sequence:

>1023_bases
ATGACTGCAGAAACTCTGCTGCTCGATTACGGAAGCGGCGGCCGCGCCTCGCAGAGGCTTATCGCCGAGCTGTTCTTCAA
GCATTTTGACAACCCCTATCTGACGGCCATGAACGACGGTGCCGTGCTGGACATCCGCGGCCCCGTGGCCATGTCCACAG
ACAGCTATACCGTTGACCCGCTGTTTTTTCCCGGCGGAGACATAGGCACACTGGCCGTGCACGGCACAGTCAACGACGTG
GCCATGATGGGCGCGCGTCCGGCATACCTCAGCTGCGGCTTCATTCTGGAAGAAGGTCTGCCCATGGAAACACTGGAACG
CATTGTCACTTCCATGGGGCTTGCCGCGCGCGAATCCGGCGTACTTATCGTTACCGGCGACACAAAGGTTGTTCCCCGCG
GCTGCGTGGATAAAATTTTTATCAACACCACGGGCGTGGGCGAGATAATCGCCGACCCCGCCCCTGCCGGCGACAAAGCC
CGCCCCGGAGACGTCATACTGGTTTCGGGCACCATGGGTGACCACGGACTGACCATCCTTTCGCATCGCGAAGGCCTTTC
CTTTGCCACCGACGTGGCCAGCGACTCCGCACCGCTGGCGCGCATGGTCGAGCGGCTGACATACGAAACAGGCAGCATAC
ATGTGCTGCGCGACCCCACCCGCGGGGGGCTGGCCACCACACTCAACGAAATCGCCGCACAGTCTGGCATGGTCTTCACC
ATTCGCGAAGAGGATATCCCCGTGCGCGAATCGGTACGCAGCGGGTGCTCGTTTCTCGGTCTCGACCCGCTGTATCTGGC
CAACGAAGGAAAACTCATCTGCATACTGCCCGCCGATAAAGCACAGCAGGCGCTGGAAATCATGCGCCAGACCCAGTTCG
GCGGCGACGCTGCCGTTATCGGACAGGTGCTTGCCCCCGGCGACGGCCCGGGCAAAGCCGGTCAGGTGGTGATGCAGACC
CCGCTGGGCGGCCACAGACTGCTGAACATGCTGGAGGGCGAACAGCTGCCCCGCATCTGCTGA

Upstream 100 bases:

>100_bases
GCCAAGGCCTGCACACCCGCCCGCCCCGTGGGACCGTGCATGGTTTCCACCGAAGGAAGCTGCGCCGCCTATTTCAAATA
CAATATCGGGAGCTGACCCC

Downstream 100 bases:

>100_bases
CAGCCGTCTGCGGTGCACCACGGCACCTGTTGACGTACCGCCTTTTTTGATGTGTACAGGCGGTGCCGTCGGCACGACAT
AAACAATTTACAGAACGCCG

Product: hydrogenase expression/formation protein HypE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTAETLLLDYGSGGRASQRLIAELFFKHFDNPYLTAMNDGAVLDIRGPVAMSTDSYTVDPLFFPGGDIGTLAVHGTVNDV
AMMGARPAYLSCGFILEEGLPMETLERIVTSMGLAARESGVLIVTGDTKVVPRGCVDKIFINTTGVGEIIADPAPAGDKA
RPGDVILVSGTMGDHGLTILSHREGLSFATDVASDSAPLARMVERLTYETGSIHVLRDPTRGGLATTLNEIAAQSGMVFT
IREEDIPVRESVRSGCSFLGLDPLYLANEGKLICILPADKAQQALEIMRQTQFGGDAAVIGQVLAPGDGPGKAGQVVMQT
PLGGHRLLNMLEGEQLPRIC

Sequences:

>Translated_340_residues
MTAETLLLDYGSGGRASQRLIAELFFKHFDNPYLTAMNDGAVLDIRGPVAMSTDSYTVDPLFFPGGDIGTLAVHGTVNDV
AMMGARPAYLSCGFILEEGLPMETLERIVTSMGLAARESGVLIVTGDTKVVPRGCVDKIFINTTGVGEIIADPAPAGDKA
RPGDVILVSGTMGDHGLTILSHREGLSFATDVASDSAPLARMVERLTYETGSIHVLRDPTRGGLATTLNEIAAQSGMVFT
IREEDIPVRESVRSGCSFLGLDPLYLANEGKLICILPADKAQQALEIMRQTQFGGDAAVIGQVLAPGDGPGKAGQVVMQT
PLGGHRLLNMLEGEQLPRIC
>Mature_339_residues
TAETLLLDYGSGGRASQRLIAELFFKHFDNPYLTAMNDGAVLDIRGPVAMSTDSYTVDPLFFPGGDIGTLAVHGTVNDVA
MMGARPAYLSCGFILEEGLPMETLERIVTSMGLAARESGVLIVTGDTKVVPRGCVDKIFINTTGVGEIIADPAPAGDKAR
PGDVILVSGTMGDHGLTILSHREGLSFATDVASDSAPLARMVERLTYETGSIHVLRDPTRGGLATTLNEIAAQSGMVFTI
REEDIPVRESVRSGCSFLGLDPLYLANEGKLICILPADKAQQALEIMRQTQFGGDAAVIGQVLAPGDGPGKAGQVVMQTP
LGGHRLLNMLEGEQLPRIC

Specific function: May be involved in the maturation of the nifE hydrogenase [H]

COG id: COG0309

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypE family [H]

Homologues:

Organism=Escherichia coli, GI226510967, Length=339, Percent_Identity=48.6725663716814, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000728
- InterPro:   IPR010918
- InterPro:   IPR011854
- InterPro:   IPR016188 [H]

Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]

EC number: NA

Molecular weight: Translated: 35927; Mature: 35796

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAETLLLDYGSGGRASQRLIAELFFKHFDNPYLTAMNDGAVLDIRGPVAMSTDSYTVDP
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCEEECCCCEEECE
LFFPGGDIGTLAVHGTVNDVAMMGARPAYLSCGFILEEGLPMETLERIVTSMGLAARESG
EEECCCCEEEEEEECCHHHHHHHCCCCHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCC
VLIVTGDTKVVPRGCVDKIFINTTGVGEIIADPAPAGDKARPGDVILVSGTMGDHGLTIL
EEEEECCCEECCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEE
SHREGLSFATDVASDSAPLARMVERLTYETGSIHVLRDPTRGGLATTLNEIAAQSGMVFT
ECCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEE
IREEDIPVRESVRSGCSFLGLDPLYLANEGKLICILPADKAQQALEIMRQTQFGGDAAVI
EECCCCCHHHHHHCCCCEECCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHH
GQVLAPGDGPGKAGQVVMQTPLGGHRLLNMLEGEQLPRIC
HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TAETLLLDYGSGGRASQRLIAELFFKHFDNPYLTAMNDGAVLDIRGPVAMSTDSYTVDP
CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCEEECCCCEEECE
LFFPGGDIGTLAVHGTVNDVAMMGARPAYLSCGFILEEGLPMETLERIVTSMGLAARESG
EEECCCCEEEEEEECCHHHHHHHCCCCHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCC
VLIVTGDTKVVPRGCVDKIFINTTGVGEIIADPAPAGDKARPGDVILVSGTMGDHGLTIL
EEEEECCCEECCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEE
SHREGLSFATDVASDSAPLARMVERLTYETGSIHVLRDPTRGGLATTLNEIAAQSGMVFT
ECCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEE
IREEDIPVRESVRSGCSFLGLDPLYLANEGKLICILPADKAQQALEIMRQTQFGGDAAVI
EECCCCCHHHHHHCCCCEECCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHH
GQVLAPGDGPGKAGQVVMQTPLGGHRLLNMLEGEQLPRIC
HHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1526470 [H]