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The map label for this gene is yebA [H]

Identifier: 78355290

GI number: 78355290

Start: 227488

End: 228390

Strand: Reverse

Name: yebA [H]

Synonym: Dde_0243

Alternate gene names: 78355290

Gene position: 228390-227488 (Counterclockwise)

Preceding gene: 78355291

Following gene: 78355289

Centisome position: 6.12

GC content: 58.03

Gene sequence:

>903_bases
ATGCTTTTTAACAAATACCACATTGTCATCTTCAAAGGCGATCAGGGCTGCTGCAGCAAACTACGGCTGCGCGGGTGGCT
GCTGTGCGCCCTGTTGCTTGTCATGGCCGGTCTTGTGGGCAGCAATATCTACTTTGCCAAATACTACTCGCAGTATCACA
CCCTGCGGGACAAGCTGGCATCGTCTGAAAAGCTGGTGGACGAACAGAATGTGCAGATTCTCAGCATGGCGGGCAAGCTG
AAGAGCATCCGCGACGACCTGCAGCGCATCCGCCAGTTCGACTCCAAACTGCGCATCATGATAAACATGGACAGAGAGCC
TGCGGAAACCTCTTCCGTCGGCGGTGCCCGCACAGACGATTTTTCCAGCGACTACCTGCCCATTCACCGGCAGGAACTGC
TGGCCCGCAAAATGCACAGCTTTCTCAAGCAGCTTAACACCGAAGTACGGCTTGAAGAAGTCAAACAGCAGGAACTGCTG
AACGCCCTTAACGAAAACCGCGAACTGCTGGCCGCCACGCCTTCCATCTGGCCCACCGAAGGCTGGATAACCTCTCCCTT
CGGCCCGCGGCGGTCTCCCTTTACGGGACGCAAGGACTTTCACAAGGGACTGGATATTTCCAACCGTCCCGGCACCCCCA
TATACGCTCCGGCCAACGGCGAAGTTCTGTTCACCGGAACAGACGGCGCATACGGCCGTACCGTGCTCGTCCGGCACAGC
GCCGGCATTGTCACCCGCTATGCCCACCTGCGCAGCTCTGCAGTTAAAAAAGGGCAGAAAGTGGCCCGGGGCGAGCTCAT
CGCCTACATGGGCAATACCGGCCGCAGCACCGGTCCGCACCTGCACTACGAGGTACGCCTGAACGGTGTGTGCGTCGATC
CCATGCGCTACATCCTCAACTAG

Upstream 100 bases:

>100_bases
GCAGCTTGACTTGACACGTAAAGTGCAATCAAAGTAACTAGTATCGTTGATCCGCCTGTCCTGTTCCGGCGGCACGAACT
GACACCATAACCCCCCGGCT

Downstream 100 bases:

>100_bases
ACTTCCCGACTTCAAGCCCTGCCCTGCAGGGCTTTTTTTTGCATCCGCCGTGCAGACCGGCGATGTTTATAACATCCGCA
ACCTGTGCGCCTCAGCGCGC

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLFNKYHIVIFKGDQGCCSKLRLRGWLLCALLLVMAGLVGSNIYFAKYYSQYHTLRDKLASSEKLVDEQNVQILSMAGKL
KSIRDDLQRIRQFDSKLRIMINMDREPAETSSVGGARTDDFSSDYLPIHRQELLARKMHSFLKQLNTEVRLEEVKQQELL
NALNENRELLAATPSIWPTEGWITSPFGPRRSPFTGRKDFHKGLDISNRPGTPIYAPANGEVLFTGTDGAYGRTVLVRHS
AGIVTRYAHLRSSAVKKGQKVARGELIAYMGNTGRSTGPHLHYEVRLNGVCVDPMRYILN

Sequences:

>Translated_300_residues
MLFNKYHIVIFKGDQGCCSKLRLRGWLLCALLLVMAGLVGSNIYFAKYYSQYHTLRDKLASSEKLVDEQNVQILSMAGKL
KSIRDDLQRIRQFDSKLRIMINMDREPAETSSVGGARTDDFSSDYLPIHRQELLARKMHSFLKQLNTEVRLEEVKQQELL
NALNENRELLAATPSIWPTEGWITSPFGPRRSPFTGRKDFHKGLDISNRPGTPIYAPANGEVLFTGTDGAYGRTVLVRHS
AGIVTRYAHLRSSAVKKGQKVARGELIAYMGNTGRSTGPHLHYEVRLNGVCVDPMRYILN
>Mature_300_residues
MLFNKYHIVIFKGDQGCCSKLRLRGWLLCALLLVMAGLVGSNIYFAKYYSQYHTLRDKLASSEKLVDEQNVQILSMAGKL
KSIRDDLQRIRQFDSKLRIMINMDREPAETSSVGGARTDDFSSDYLPIHRQELLARKMHSFLKQLNTEVRLEEVKQQELL
NALNENRELLAATPSIWPTEGWITSPFGPRRSPFTGRKDFHKGLDISNRPGTPIYAPANGEVLFTGTDGAYGRTVLVRHS
AGIVTRYAHLRSSAVKKGQKVARGELIAYMGNTGRSTGPHLHYEVRLNGVCVDPMRYILN

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=51.7543859649123, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082174, Length=132, Percent_Identity=35.6060606060606, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=35.7723577235772, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082297, Length=124, Percent_Identity=29.8387096774194, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33915; Mature: 33915

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNKYHIVIFKGDQGCCSKLRLRGWLLCALLLVMAGLVGSNIYFAKYYSQYHTLRDKLA
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SSEKLVDEQNVQILSMAGKLKSIRDDLQRIRQFDSKLRIMINMDREPAETSSVGGARTDD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCC
FSSDYLPIHRQELLARKMHSFLKQLNTEVRLEEVKQQELLNALNENRELLAATPSIWPTE
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
GWITSPFGPRRSPFTGRKDFHKGLDISNRPGTPIYAPANGEVLFTGTDGAYGRTVLVRHS
CEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCEEEEEEC
AGIVTRYAHLRSSAVKKGQKVARGELIAYMGNTGRSTGPHLHYEVRLNGVCVDPMRYILN
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEECCEEECHHHHHCC
>Mature Secondary Structure
MLFNKYHIVIFKGDQGCCSKLRLRGWLLCALLLVMAGLVGSNIYFAKYYSQYHTLRDKLA
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SSEKLVDEQNVQILSMAGKLKSIRDDLQRIRQFDSKLRIMINMDREPAETSSVGGARTDD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCC
FSSDYLPIHRQELLARKMHSFLKQLNTEVRLEEVKQQELLNALNENRELLAATPSIWPTE
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
GWITSPFGPRRSPFTGRKDFHKGLDISNRPGTPIYAPANGEVLFTGTDGAYGRTVLVRHS
CEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCEEEEEEC
AGIVTRYAHLRSSAVKKGQKVARGELIAYMGNTGRSTGPHLHYEVRLNGVCVDPMRYILN
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEECCEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]