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The map label for this gene is yckA [H]

Identifier: 78355232

GI number: 78355232

Start: 170698

End: 171366

Strand: Reverse

Name: yckA [H]

Synonym: Dde_0185

Alternate gene names: 78355232

Gene position: 171366-170698 (Counterclockwise)

Preceding gene: 78355233

Following gene: 78355231

Centisome position: 4.59

GC content: 58.89

Gene sequence:

>669_bases
ATGATGCAACAACTCACAACCGTACTCGAAGCCATGCCCTACATCCTGCAGGGGGGGCTGGTCTCTCTGCTCATTGTGGC
CGGCGCCATGATGCTGGGGCTGGCCATGGGCATACCCATGGCAGTGGGACAGGTGTACGGTTCGCCTTTTCTGCGCAGGC
TCATCGGCCTGTATGTATGGTTCTTCCGCGGCGTTCCCATTCTGGTTCTCATGTTTCTTTTCTATTTCGGCGTGTTTGAA
CTGCTGGGCCTGAACCTGAGCGCCATTTCCGCCACGGCGCTGGTGCTGGGCATGACCAGCGCCGCCTACCAGTCGCAGAT
TTTCCGCGGTTCCATACAGGCGCTGCCCGCAGGGCAGCTTAAAGCGGCACGGGCCATGGGCATGAGCGATTCGCAGGCCA
TACGGGCCGTTATACTGCCGCAGGCGCTGCGCCTTTCCCTGCCGGGCTGGTCCAACGAATATTCCATCATACTCAAAGAC
TCGGCTCTGGCCTATGTGGTCGGCGCCATGGACATTTTCACGCGTACGCACTTTGTGGCATCGCGCACCTACGAGCATCT
GCCGCTGTTCATCGCGGCCGGAGCACTGTATTTCGTCATCACCCTGACCGGCGTCAAACTGCTTGCCGCACTTGAGAAAA
AAGTCCGCATTCCGGGCTACACCACATAA

Upstream 100 bases:

>100_bases
GGCTGCCGCCGGCATCAGCCGTCCCCCGACGGACGGCCGCTCACGGCGTACCGCACGCACATGCGGCACGCCACACTTTT
TCCAACTGGTAATAAGACTG

Downstream 100 bases:

>100_bases
GGAATTTTAACCCATGACAGCAGCCAAAAGCCCCATCCTGCGTGTGGAAAACGTCTGTAAGCAGCTTGGCGGCAAAGAAA
TACTCAAATCTGTCACCCTT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MMQQLTTVLEAMPYILQGGLVSLLIVAGAMMLGLAMGIPMAVGQVYGSPFLRRLIGLYVWFFRGVPILVLMFLFYFGVFE
LLGLNLSAISATALVLGMTSAAYQSQIFRGSIQALPAGQLKAARAMGMSDSQAIRAVILPQALRLSLPGWSNEYSIILKD
SALAYVVGAMDIFTRTHFVASRTYEHLPLFIAAGALYFVITLTGVKLLAALEKKVRIPGYTT

Sequences:

>Translated_222_residues
MMQQLTTVLEAMPYILQGGLVSLLIVAGAMMLGLAMGIPMAVGQVYGSPFLRRLIGLYVWFFRGVPILVLMFLFYFGVFE
LLGLNLSAISATALVLGMTSAAYQSQIFRGSIQALPAGQLKAARAMGMSDSQAIRAVILPQALRLSLPGWSNEYSIILKD
SALAYVVGAMDIFTRTHFVASRTYEHLPLFIAAGALYFVITLTGVKLLAALEKKVRIPGYTT
>Mature_222_residues
MMQQLTTVLEAMPYILQGGLVSLLIVAGAMMLGLAMGIPMAVGQVYGSPFLRRLIGLYVWFFRGVPILVLMFLFYFGVFE
LLGLNLSAISATALVLGMTSAAYQSQIFRGSIQALPAGQLKAARAMGMSDSQAIRAVILPQALRLSLPGWSNEYSIILKD
SALAYVVGAMDIFTRTHFVASRTYEHLPLFIAAGALYFVITLTGVKLLAALEKKVRIPGYTT

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=29.1666666666667, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=30, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=32.7102803738318, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=30.8411214953271, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=29.9539170506912, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787087, Length=175, Percent_Identity=29.7142857142857, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=26.605504587156, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=29.8165137614679, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082239, Length=160, Percent_Identity=32.5, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI48994930, Length=135, Percent_Identity=31.8518518518519, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24062; Mature: 24062

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQQLTTVLEAMPYILQGGLVSLLIVAGAMMLGLAMGIPMAVGQVYGSPFLRRLIGLYVW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHH
FFRGVPILVLMFLFYFGVFELLGLNLSAISATALVLGMTSAAYQSQIFRGSIQALPAGQL
HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KAARAMGMSDSQAIRAVILPQALRLSLPGWSNEYSIILKDSALAYVVGAMDIFTRTHFVA
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
SRTYEHLPLFIAAGALYFVITLTGVKLLAALEKKVRIPGYTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMQQLTTVLEAMPYILQGGLVSLLIVAGAMMLGLAMGIPMAVGQVYGSPFLRRLIGLYVW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHH
FFRGVPILVLMFLFYFGVFELLGLNLSAISATALVLGMTSAAYQSQIFRGSIQALPAGQL
HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
KAARAMGMSDSQAIRAVILPQALRLSLPGWSNEYSIILKDSALAYVVGAMDIFTRTHFVA
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
SRTYEHLPLFIAAGALYFVITLTGVKLLAALEKKVRIPGYTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]