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The map label for this gene is yjiM [H]

Identifier: 78355137

GI number: 78355137

Start: 82773

End: 84053

Strand: Reverse

Name: yjiM [H]

Synonym: Dde_0090

Alternate gene names: 78355137

Gene position: 84053-82773 (Counterclockwise)

Preceding gene: 78355141

Following gene: 78355136

Centisome position: 2.25

GC content: 55.58

Gene sequence:

>1281_bases
ATGAGCAACCCGGCATACACAGCAATGTGGGAAAAACTCAATCTCGACATTCCCGCTCATGACGGACTTCTGGAAGTACT
GGGCAAATTTTACGGCGATATCTACATGTCGCAGCAGGGCCGCCTGCAGGGCATGGAATATCTGGATTTTGTACTTTCAG
AAGTACACGGTCTGCGCATACAGGAACTGCAGCAGGCTAAAGAGCAGGGCAAGAAGATCATCGGCACGTTCTGTGTCTTT
GTTCCCGAAGAAATCACACTGGCTGCCGGTGCCGTGCATGTGGGCCTGTGCTCCGGTGCCGATGCAGGAACCGAAGAAGC
GGAAAAGCTCGTTCCCCGCAATACCTGCGCCCTTATCAAATCCTTCATCGGTTTCAAACTGGCACGCCTGTGTCCGTTTA
CCGAATCCTGTGATCTGGTGGTGGGAGAAACCACCTGCGACGGCAAGAAAAAAGCTTATGAAGCCTTTGCAGAACATGTT
CCCATGCATGTGATGGAGGTACCCAACACAAAAAGCGATGCCGCGCGCGATCTTTTTAAAACCGAAGTGCTGCGCTACAT
GCAGGCGTTGCAACAGCTCACCGGCACGGCCATAACTCCGCAGGCGCTTGCCTCGGGCATCCGCGCCGTCAACGCCAAAC
GCCGGGCACTGCAGCGTCTTTCCGCCCTGCGCAGCGCCGATCCCGCCCCCATATCCGGACGGGACGCCCTGCTTATCAAT
CAGGTTTCATTCTACGACGACCCGGAACGCTTTACCCACTCCATAAACGCGCTGTGCGACCAGATGGAAGAACGCATAGC
GCGCAAGGAAGGCATAGCCCCCGCAGGCACACCGCGTCTGCTGCTTTCAGGATGCCCCATGGCCGTCCCCAACTGGAAAC
TGCCTTACATCATGGAAAGCTCCGGCGCCGTGATAGTGGGAGAAGAGTCCTGCATCGGCACGCGCAACACACGCGACCTT
GTGGATGAATCGCAGGAGACCCTTGACGGAATGATAGACGCGCTGGTGGACAGATATATGAAAATCGACTGCGCCTGCTT
TACCCCCAACACGGAACGGCTGCACAATGTCACCGCCATGGCGCAGGAACTGAAAGCGGACGGCATAGTGCACTATGCCC
TCAAGTTCTGTCAGCCCTATGCGCACGAAGCTTTTAAAATTGAAAAAGCAGCCCGCGAGAAAGACATCCCCGTACTCAGT
GTGGAAACCGACTACTCCATGGAAGACGCGGAACAGCTGAAAACCCGCGTGGAAGCTTTTGTGGAAATGGTGCGCGGATA
A

Upstream 100 bases:

>100_bases
TCGGAACAAACTATTTGCCCGCTGCCGGAACCTCCTGCACACGAAAGAGACCCGCCCCCTTACACACAGGGCTCACCGCA
ACTTCAGCATCGGAGGAACA

Downstream 100 bases:

>100_bases
ATGCTCACAGCCGGCATAGACATAGGGTCACGCTCCATCGAACTGGTGGTCCAAAAGGACGGTACAACCGTACACAGTGC
ACGCTCTGACACGACCTTTG

Product: 2-hydroxyglutaryl-CoA dehydratase subunit beta-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MSNPAYTAMWEKLNLDIPAHDGLLEVLGKFYGDIYMSQQGRLQGMEYLDFVLSEVHGLRIQELQQAKEQGKKIIGTFCVF
VPEEITLAAGAVHVGLCSGADAGTEEAEKLVPRNTCALIKSFIGFKLARLCPFTESCDLVVGETTCDGKKKAYEAFAEHV
PMHVMEVPNTKSDAARDLFKTEVLRYMQALQQLTGTAITPQALASGIRAVNAKRRALQRLSALRSADPAPISGRDALLIN
QVSFYDDPERFTHSINALCDQMEERIARKEGIAPAGTPRLLLSGCPMAVPNWKLPYIMESSGAVIVGEESCIGTRNTRDL
VDESQETLDGMIDALVDRYMKIDCACFTPNTERLHNVTAMAQELKADGIVHYALKFCQPYAHEAFKIEKAAREKDIPVLS
VETDYSMEDAEQLKTRVEAFVEMVRG

Sequences:

>Translated_426_residues
MSNPAYTAMWEKLNLDIPAHDGLLEVLGKFYGDIYMSQQGRLQGMEYLDFVLSEVHGLRIQELQQAKEQGKKIIGTFCVF
VPEEITLAAGAVHVGLCSGADAGTEEAEKLVPRNTCALIKSFIGFKLARLCPFTESCDLVVGETTCDGKKKAYEAFAEHV
PMHVMEVPNTKSDAARDLFKTEVLRYMQALQQLTGTAITPQALASGIRAVNAKRRALQRLSALRSADPAPISGRDALLIN
QVSFYDDPERFTHSINALCDQMEERIARKEGIAPAGTPRLLLSGCPMAVPNWKLPYIMESSGAVIVGEESCIGTRNTRDL
VDESQETLDGMIDALVDRYMKIDCACFTPNTERLHNVTAMAQELKADGIVHYALKFCQPYAHEAFKIEKAAREKDIPVLS
VETDYSMEDAEQLKTRVEAFVEMVRG
>Mature_425_residues
SNPAYTAMWEKLNLDIPAHDGLLEVLGKFYGDIYMSQQGRLQGMEYLDFVLSEVHGLRIQELQQAKEQGKKIIGTFCVFV
PEEITLAAGAVHVGLCSGADAGTEEAEKLVPRNTCALIKSFIGFKLARLCPFTESCDLVVGETTCDGKKKAYEAFAEHVP
MHVMEVPNTKSDAARDLFKTEVLRYMQALQQLTGTAITPQALASGIRAVNAKRRALQRLSALRSADPAPISGRDALLINQ
VSFYDDPERFTHSINALCDQMEERIARKEGIAPAGTPRLLLSGCPMAVPNWKLPYIMESSGAVIVGEESCIGTRNTRDLV
DESQETLDGMIDALVDRYMKIDCACFTPNTERLHNVTAMAQELKADGIVHYALKFCQPYAHEAFKIEKAAREKDIPVLSV
ETDYSMEDAEQLKTRVEAFVEMVRG

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=361, Percent_Identity=41.2742382271468, Blast_Score=280, Evalue=9e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 47136; Mature: 47004

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPAYTAMWEKLNLDIPAHDGLLEVLGKFYGDIYMSQQGRLQGMEYLDFVLSEVHGLRI
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
QELQQAKEQGKKIIGTFCVFVPEEITLAAGAVHVGLCSGADAGTEEAEKLVPRNTCALIK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHEEEEECCCCCCHHHHHHHCCCHHHHHHH
SFIGFKLARLCPFTESCDLVVGETTCDGKKKAYEAFAEHVPMHVMEVPNTKSDAARDLFK
HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHH
TEVLRYMQALQQLTGTAITPQALASGIRAVNAKRRALQRLSALRSADPAPISGRDALLIN
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
QVSFYDDPERFTHSINALCDQMEERIARKEGIAPAGTPRLLLSGCPMAVPNWKLPYIMES
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEECC
SGAVIVGEESCIGTRNTRDLVDESQETLDGMIDALVDRYMKIDCACFTPNTERLHNVTAM
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
AQELKADGIVHYALKFCQPYAHEAFKIEKAAREKDIPVLSVETDYSMEDAEQLKTRVEAF
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
VEMVRG
HHHHCC
>Mature Secondary Structure 
SNPAYTAMWEKLNLDIPAHDGLLEVLGKFYGDIYMSQQGRLQGMEYLDFVLSEVHGLRI
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
QELQQAKEQGKKIIGTFCVFVPEEITLAAGAVHVGLCSGADAGTEEAEKLVPRNTCALIK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHEEEEECCCCCCHHHHHHHCCCHHHHHHH
SFIGFKLARLCPFTESCDLVVGETTCDGKKKAYEAFAEHVPMHVMEVPNTKSDAARDLFK
HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHH
TEVLRYMQALQQLTGTAITPQALASGIRAVNAKRRALQRLSALRSADPAPISGRDALLIN
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
QVSFYDDPERFTHSINALCDQMEERIARKEGIAPAGTPRLLLSGCPMAVPNWKLPYIMES
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEECC
SGAVIVGEESCIGTRNTRDLVDESQETLDGMIDALVDRYMKIDCACFTPNTERLHNVTAM
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
AQELKADGIVHYALKFCQPYAHEAFKIEKAAREKDIPVLSVETDYSMEDAEQLKTRVEAF
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
VEMVRG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]