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The map label for this gene is pal [H]

Identifier: 78224682

GI number: 78224682

Start: 3929493

End: 3930077

Strand: Reverse

Name: pal [H]

Synonym: Gmet_3499

Alternate gene names: 78224682

Gene position: 3930077-3929493 (Counterclockwise)

Preceding gene: 78224683

Following gene: 78224680

Centisome position: 98.32

GC content: 52.65

Gene sequence:

>585_bases
ATGAGAAAAATGTTGTGTCGTGTCACAATGTTAAGCATCGGAATCCTTGCGGTGGCAGGTTGTGCCAAAAACGAGACGAT
AAAGAAAGATGAGATGGTCCCGGTCGCATCAAACAAGACTGCTCAAGCGGCCGTTGCCAAGCCGGCAGTAAAGGATGGGG
GAATCAAGACTCCGCCGGCCAAGGAGGTTCAGTCCAAAGACCAGTCCAAGGAAGGTGCCGCAAAGGGCACTATGACAGAA
GCTCAACTGCAGGCTGCCCTTACCAAGATTTTCTTTAATTTCGACTCGTCCGTGCTTTCTTCGGAAGGGCGGGAAACACT
GGTCAAGAACGCCGAGTTGTTAAAGAGTGCCAGTTTCAAGGTGCGGATAGAAGGGAACTGCGACGAGCGGGGTTCTGACG
AGTACAATCTTGCCCTTGGGGAGAGGAGGGCACAGGCAGCAATGAAATACCTGCTTACCATGGGTGTGCCGGCCGATCGC
CTCTCCATCATCAGTTACGGAGAGGAAAAACCCGCTGATCCGGGACACGACGAAGCAGCCTGGGCAAAAAACAGGCGGGA
TGAATTCGTCGTAATGGTCAAGTAA

Upstream 100 bases:

>100_bases
TCACCCTGGCCCTCTCCCTCAGGGAGAGGGGATGATGTAATCGCCGAAGCGGAAAATTTGATGCCAATCAGCTTCCATTT
TTACCAGGAGAAGTATCGCC

Downstream 100 bases:

>100_bases
CGGAAACCATGGGGGCAAAGGAGCCGGAACGGCTCCTTTGCCCCTCTACCCACGCCTTGCCACGTTCGCTGCATCACTCT
GCTGATGGCTGGTTGGCAAG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRKMLCRVTMLSIGILAVAGCAKNETIKKDEMVPVASNKTAQAAVAKPAVKDGGIKTPPAKEVQSKDQSKEGAAKGTMTE
AQLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFKVRIEGNCDERGSDEYNLALGERRAQAAMKYLLTMGVPADR
LSIISYGEEKPADPGHDEAAWAKNRRDEFVVMVK

Sequences:

>Translated_194_residues
MRKMLCRVTMLSIGILAVAGCAKNETIKKDEMVPVASNKTAQAAVAKPAVKDGGIKTPPAKEVQSKDQSKEGAAKGTMTE
AQLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFKVRIEGNCDERGSDEYNLALGERRAQAAMKYLLTMGVPADR
LSIISYGEEKPADPGHDEAAWAKNRRDEFVVMVK
>Mature_194_residues
MRKMLCRVTMLSIGILAVAGCAKNETIKKDEMVPVASNKTAQAAVAKPAVKDGGIKTPPAKEVQSKDQSKEGAAKGTMTE
AQLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFKVRIEGNCDERGSDEYNLALGERRAQAAMKYLLTMGVPADR
LSIISYGEEKPADPGHDEAAWAKNRRDEFVVMVK

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=52.0408163265306, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787191, Length=87, Percent_Identity=36.7816091954023, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21024; Mature: 21024

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMLCRVTMLSIGILAVAGCAKNETIKKDEMVPVASNKTAQAAVAKPAVKDGGIKTPPA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCH
KEVQSKDQSKEGAAKGTMTEAQLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFK
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCEE
VRIEGNCDERGSDEYNLALGERRAQAAMKYLLTMGVPADRLSIISYGEEKPADPGHDEAA
EEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCCCCCCCCCHH
WAKNRRDEFVVMVK
HHCCCCCCEEEEEC
>Mature Secondary Structure
MRKMLCRVTMLSIGILAVAGCAKNETIKKDEMVPVASNKTAQAAVAKPAVKDGGIKTPPA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCH
KEVQSKDQSKEGAAKGTMTEAQLQAALTKIFFNFDSSVLSSEGRETLVKNAELLKSASFK
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCEE
VRIEGNCDERGSDEYNLALGERRAQAAMKYLLTMGVPADRLSIISYGEEKPADPGHDEAA
EEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCCCCCCCCCHH
WAKNRRDEFVVMVK
HHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]