Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78224642

GI number: 78224642

Start: 3870467

End: 3871885

Strand: Direct

Name: bphB [H]

Synonym: Gmet_3455

Alternate gene names: 78224642

Gene position: 3870467-3871885 (Clockwise)

Preceding gene: 78224641

Following gene: 78224646

Centisome position: 96.82

GC content: 58.35

Gene sequence:

>1419_bases
ATGCCATCAGGGTGTCCGGCAATGAGTGAGCATCAACCGCAAACCAGCGGCACGATAACGGCTCGAGTCCCTGACGGCCC
CGCGGCCGAGCTCGCGCAACTCAAGGAGGAAAATGCCCGGCTCCGCGCCCGGCTCGCCAGCAAGTCCGACTACATCCGCC
GCAAGGTCGACCAGATGCTCACGGTCATGGGCACCCGGCCGCTCCGCCAGGAAGAACTCGACGACAACACCTTGATCGAC
GTGGACCCCTTGGGCATCCTGGTGGATTCCTTCGCCCACATCCTCGACCATCTCCACACGACAAACCGCGAACTCACCGA
GAATCGGGAGTTGTTGCAGACCATCTTCTCCTCTCTCGAATCGGGCATCCTCCTGATCCGGGAGGAAGACCATGTGATCA
CGGACGTGAACGAAACGGCGTGCCGCAGCCTTGGGCTGAAGCGTGAAGACATCCTCGGCCAACTCTGTTTTTCGTTCATC
TACCCCGACTGCACCGGTGCCTGCCCCATGAAGGAGCAGAACCTGAAAATCGACAATTCCGAACGGATGCTCCGTGCGGC
TGACGGTCACATCGTGCCGGTGCTGAAAACCGTCGGGCGGGTCATGGTGCACGGCATTCCGCACTTTCTTGAAAGCTTCA
TTGACATCACTGCCCAGAAAGAGGCGGAAGCAGAGATCCTGGCCCTGAATGATGACCTGGAAATGCGGGTGCAGGAACGA
ACGGCGGAATTGATCCAGGCCAACCGCGAGATGGAGTCGTTCAGCTACTCCATCTCCCATGACCTGCGGGCGCCGTTACG
GCACATCAACGGCTATATCAACATTCTCCGCGAGGATTATGGCGGCCATCTGGATATGGCTGGGATCAACTGCCTGCAAC
GGGTCGATGCCGCCAGCAAACAGATGGGAATGCTGATCGACGACCTCCTTTCCTTCTCGCGGATCCCGCGAACCCTCAAA
AACCCTCAAACGGTCGACCTGAGCCAACTGGCCCGCGACGTAACCGTCATGCTCCGCGAAACGGAGCCCGACCGGCAGGT
GGAGGTGGAAATCCAGGATGGATTGGTTGCCCATGGGGATGTTTCACTGTTGAACATGGTAGTCCAGAACCTGATCGGCA
ACGCATGGAAATTCACGGCAAGGAGCAGCCGGGCGGCCATTTCTTTCGGGAGGAAACGACAGGGGGAGAGGGACGTATTT
TTTGTGCTTGACAATGGCGTCGGCTTCGACATGACCTATCAGAACAAGCTTTTCAAGGTCTTCGAACGGCTGAACGGCGA
AGAATTTGAGGGAACCGGCATCGGCCTGGCAATAGTCAAGCGGATCGTCAACCGTCACGGCGGAGATATCTGGGCTGAGT
CTTCTCCGGGCAACGGGGCAACCTTTTACTTCACGTTGGCCTCCCCGCGGCAACCTTAG

Upstream 100 bases:

>100_bases
CTCCTGTTCCTGACCACCAATCGCGACTCGACCCACACCATTCCCGAATCGGCGCAGAACATGGGATTTTGTGCTGTGGT
GGCCCCCCGGGACGGCTACT

Downstream 100 bases:

>100_bases
GCCCCCATCCATGATCAGTGGCTGTGCCTGTGGTGGATATCGGGCCAGTGAACGTGAGAATGGGTGAGCGGCTCATGCAG
GTGGGGATGGTCATGGGGCT

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MPSGCPAMSEHQPQTSGTITARVPDGPAAELAQLKEENARLRARLASKSDYIRRKVDQMLTVMGTRPLRQEELDDNTLID
VDPLGILVDSFAHILDHLHTTNRELTENRELLQTIFSSLESGILLIREEDHVITDVNETACRSLGLKREDILGQLCFSFI
YPDCTGACPMKEQNLKIDNSERMLRAADGHIVPVLKTVGRVMVHGIPHFLESFIDITAQKEAEAEILALNDDLEMRVQER
TAELIQANREMESFSYSISHDLRAPLRHINGYINILREDYGGHLDMAGINCLQRVDAASKQMGMLIDDLLSFSRIPRTLK
NPQTVDLSQLARDVTVMLRETEPDRQVEVEIQDGLVAHGDVSLLNMVVQNLIGNAWKFTARSSRAAISFGRKRQGERDVF
FVLDNGVGFDMTYQNKLFKVFERLNGEEFEGTGIGLAIVKRIVNRHGGDIWAESSPGNGATFYFTLASPRQP

Sequences:

>Translated_472_residues
MPSGCPAMSEHQPQTSGTITARVPDGPAAELAQLKEENARLRARLASKSDYIRRKVDQMLTVMGTRPLRQEELDDNTLID
VDPLGILVDSFAHILDHLHTTNRELTENRELLQTIFSSLESGILLIREEDHVITDVNETACRSLGLKREDILGQLCFSFI
YPDCTGACPMKEQNLKIDNSERMLRAADGHIVPVLKTVGRVMVHGIPHFLESFIDITAQKEAEAEILALNDDLEMRVQER
TAELIQANREMESFSYSISHDLRAPLRHINGYINILREDYGGHLDMAGINCLQRVDAASKQMGMLIDDLLSFSRIPRTLK
NPQTVDLSQLARDVTVMLRETEPDRQVEVEIQDGLVAHGDVSLLNMVVQNLIGNAWKFTARSSRAAISFGRKRQGERDVF
FVLDNGVGFDMTYQNKLFKVFERLNGEEFEGTGIGLAIVKRIVNRHGGDIWAESSPGNGATFYFTLASPRQP
>Mature_471_residues
PSGCPAMSEHQPQTSGTITARVPDGPAAELAQLKEENARLRARLASKSDYIRRKVDQMLTVMGTRPLRQEELDDNTLIDV
DPLGILVDSFAHILDHLHTTNRELTENRELLQTIFSSLESGILLIREEDHVITDVNETACRSLGLKREDILGQLCFSFIY
PDCTGACPMKEQNLKIDNSERMLRAADGHIVPVLKTVGRVMVHGIPHFLESFIDITAQKEAEAEILALNDDLEMRVQERT
AELIQANREMESFSYSISHDLRAPLRHINGYINILREDYGGHLDMAGINCLQRVDAASKQMGMLIDDLLSFSRIPRTLKN
PQTVDLSQLARDVTVMLRETEPDRQVEVEIQDGLVAHGDVSLLNMVVQNLIGNAWKFTARSSRAAISFGRKRQGERDVFF
VLDNGVGFDMTYQNKLFKVFERLNGEEFEGTGIGLAIVKRIVNRHGGDIWAESSPGNGATFYFTLASPRQP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=379, Percent_Identity=28.7598944591029, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1789149, Length=250, Percent_Identity=27.6, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=304, Percent_Identity=26.6447368421053, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693157, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786600, Length=269, Percent_Identity=27.8810408921933, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788713, Length=237, Percent_Identity=25.7383966244726, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786912, Length=290, Percent_Identity=28.9655172413793, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081816, Length=336, Percent_Identity=25, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1790551, Length=261, Percent_Identity=26.0536398467433, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 52939; Mature: 52808

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSGCPAMSEHQPQTSGTITARVPDGPAAELAQLKEENARLRARLASKSDYIRRKVDQML
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMGTRPLRQEELDDNTLIDVDPLGILVDSFAHILDHLHTTNRELTENRELLQTIFSSLE
HHHCCCCCCHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
SGILLIREEDHVITDVNETACRSLGLKREDILGQLCFSFIYPDCTGACPMKEQNLKIDNS
CCEEEEEECCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
ERMLRAADGHIVPVLKTVGRVMVHGIPHFLESFIDITAQKEAEAEILALNDDLEMRVQER
HHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH
TAELIQANREMESFSYSISHDLRAPLRHINGYINILREDYGGHLDMAGINCLQRVDAASK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHH
QMGMLIDDLLSFSRIPRTLKNPQTVDLSQLARDVTVMLRETEPDRQVEVEIQDGLVAHGD
HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEECCH
VSLLNMVVQNLIGNAWKFTARSSRAAISFGRKRQGERDVFFVLDNGVGFDMTYQNKLFKV
HHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH
FERLNGEEFEGTGIGLAIVKRIVNRHGGDIWAESSPGNGATFYFTLASPRQP
HHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
PSGCPAMSEHQPQTSGTITARVPDGPAAELAQLKEENARLRARLASKSDYIRRKVDQML
CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMGTRPLRQEELDDNTLIDVDPLGILVDSFAHILDHLHTTNRELTENRELLQTIFSSLE
HHHCCCCCCHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
SGILLIREEDHVITDVNETACRSLGLKREDILGQLCFSFIYPDCTGACPMKEQNLKIDNS
CCEEEEEECCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
ERMLRAADGHIVPVLKTVGRVMVHGIPHFLESFIDITAQKEAEAEILALNDDLEMRVQER
HHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH
TAELIQANREMESFSYSISHDLRAPLRHINGYINILREDYGGHLDMAGINCLQRVDAASK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHH
QMGMLIDDLLSFSRIPRTLKNPQTVDLSQLARDVTVMLRETEPDRQVEVEIQDGLVAHGD
HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEEECCH
VSLLNMVVQNLIGNAWKFTARSSRAAISFGRKRQGERDVFFVLDNGVGFDMTYQNKLFKV
HHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH
FERLNGEEFEGTGIGLAIVKRIVNRHGGDIWAESSPGNGATFYFTLASPRQP
HHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]