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The map label for this gene is ykoM [H]

Identifier: 78224637

GI number: 78224637

Start: 3866997

End: 3867452

Strand: Reverse

Name: ykoM [H]

Synonym: Gmet_3450

Alternate gene names: 78224637

Gene position: 3867452-3866997 (Counterclockwise)

Preceding gene: 78224643

Following gene: 78224636

Centisome position: 96.75

GC content: 53.29

Gene sequence:

>456_bases
ATGAAACATGCAAACAACTACACTGCCTATCGTGCTCTGAACAGTTACACCAAGCTGATGCGTGCGGCGGAGTCAGTGAC
CTCCCGCACTAGTCGGCCGATGGCGGCAGCAGGTCTGACCATCAGCCAGTTTGGCGTGCTGGAAGCTTTGTTGCACAAGG
GACCATTGTGCCAGCGGGACATCGCGGCCAAGATCCTCAAGAGTACCGGCAACATCACCATGGTGATCGACAACCTGGAG
AAACAGGGTCTGGTAAGGCGAGAGCGTGACATGGAAGACCGGCGCTATCTGACTGTCCATCTGACCGAAAAGGGGACAAT
ACTCATTAATAAAGTGTTTGCGGATGTTGAGGCATCGATCGTTGCCGAAATGTCCACGCTTTCCGCTGATGAGCAGGAAC
AGCTGGGAAGTTTGTGCAAGAAACTGGGATTGAAAGGGGGAACCAGCCAAGCATAA

Upstream 100 bases:

>100_bases
ATTCATACGATTGGCCAGTATGAAAAATATGTTTGACAAGTTTGCTGGAATCATATAGCTTAACGTTAAGCTATATGACA
TGGAAATAAAGAGGCTGAAA

Downstream 100 bases:

>100_bases
AAAATTTGTCCAACTAGTTTAATGTCAAATTATCTGGCATCCAGCCAGGCATAACAACAGAAAAGGAGAAACAGTTCATG
AAACGCATCATCGCATCAAT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKHANNYTAYRALNSYTKLMRAAESVTSRTSRPMAAAGLTISQFGVLEALLHKGPLCQRDIAAKILKSTGNITMVIDNLE
KQGLVRRERDMEDRRYLTVHLTEKGTILINKVFADVEASIVAEMSTLSADEQEQLGSLCKKLGLKGGTSQA

Sequences:

>Translated_151_residues
MKHANNYTAYRALNSYTKLMRAAESVTSRTSRPMAAAGLTISQFGVLEALLHKGPLCQRDIAAKILKSTGNITMVIDNLE
KQGLVRRERDMEDRRYLTVHLTEKGTILINKVFADVEASIVAEMSTLSADEQEQLGSLCKKLGLKGGTSQA
>Mature_151_residues
MKHANNYTAYRALNSYTKLMRAAESVTSRTSRPMAAAGLTISQFGVLEALLHKGPLCQRDIAAKILKSTGNITMVIDNLE
KQGLVRRERDMEDRRYLTVHLTEKGTILINKVFADVEASIVAEMSTLSADEQEQLGSLCKKLGLKGGTSQA

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16585; Mature: 16585

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHANNYTAYRALNSYTKLMRAAESVTSRTSRPMAAAGLTISQFGVLEALLHKGPLCQRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHH
IAAKILKSTGNITMVIDNLEKQGLVRRERDMEDRRYLTVHLTEKGTILINKVFADVEASI
HHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHH
VAEMSTLSADEQEQLGSLCKKLGLKGGTSQA
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKHANNYTAYRALNSYTKLMRAAESVTSRTSRPMAAAGLTISQFGVLEALLHKGPLCQRD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHH
IAAKILKSTGNITMVIDNLEKQGLVRRERDMEDRRYLTVHLTEKGTILINKVFADVEASI
HHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHH
VAEMSTLSADEQEQLGSLCKKLGLKGGTSQA
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]