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The map label for this gene is ydcN [C]

Identifier: 78224438

GI number: 78224438

Start: 3653676

End: 3654239

Strand: Direct

Name: ydcN [C]

Synonym: Gmet_3247

Alternate gene names: 78224438

Gene position: 3653676-3654239 (Clockwise)

Preceding gene: 78224437

Following gene: 78224439

Centisome position: 91.4

GC content: 57.27

Gene sequence:

>564_bases
ATGTCCGAATACAACATCGGGGCCAAGATCAAAAAGCTCCGTCTGGCCAAGAAGCTGACTCTCCAGGCGGTCGCCCGAGA
AACAGGCTTTTCCCCCGCCCTCATATCCCAGATCGAGAACAACAACGTCTCCCCTCCCATCGCGACCTTGTCCAAGATCG
CAAAATTCTTCGACGTTAAGATCAGCCTCTTCTTCTCCGAGGATGAAGAGGAATACCGCTATGAGGTGGTTCGCCGGGGC
GAGCGCAAGGTGATCCCCCGGGTCATCTCCCGGGCCGGCACCAGCCAGGGGTACTCCTACGAGTCACTCTCCTTCCGCAA
GCAGAACAAGAAGATGGAACCCTTCCTCCTCACCGTCACCGAAAAGGCCGCCGAGGAGAACACCTACAGCCATGATGGCG
AAGAGTTCCTCTTTGTCATGAAAGGGACTGCGGAGCTACTGCTCGAAGACGAACGGATCGCCCTCGAAGAGGGGGATTGC
GTCTACTTCGACTCGTCCCTCAGACACCGACTCCTCTCCAGGGACGGAAACGAAGTCCAAGTGCTGGCGGTGGTTACCCG
CTAA

Upstream 100 bases:

>100_bases
AGTCAAGATAAAAATTATTTTATTGACAGTACAAACCACTTTAGGGTATGTAAATGCTGAATAAAAACCAGTTTTATTTC
TTTCTTCAACGGGGTAGCGG

Downstream 100 bases:

>100_bases
ACCGACACCCCCCTCAGACAACCCGTTTTTTTATGCAGAATCGTATACATAATCACCTTTAAACGTGCACGGAACTCAAC
AGGAGGGATTTCGCAATGCG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; HTH-Type Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcription Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Cupin Domain Protein; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Phosphate Butyryltransferase; HTH_3family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRG
ERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYSHDGEEFLFVMKGTAELLLEDERIALEEGDC
VYFDSSLRHRLLSRDGNEVQVLAVVTR

Sequences:

>Translated_187_residues
MSEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRG
ERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYSHDGEEFLFVMKGTAELLLEDERIALEEGDC
VYFDSSLRHRLLSRDGNEVQVLAVVTR
>Mature_186_residues
SEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRGE
RKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYSHDGEEFLFVMKGTAELLLEDERIALEEGDCV
YFDSSLRHRLLSRDGNEVQVLAVVTR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21366; Mature: 21234

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHEE
ISLFFSEDEEEYRYEVVRRGERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVT
EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKAAEENTYSHDGEEFLFVMKGTAELLLEDERIALEEGDCVYFDSSLRHRLLSRDGNEVQ
HHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCEEEECHHHHHHHHHCCCCEEE
VLAVVTR
EEEEEEC
>Mature Secondary Structure 
SEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHEE
ISLFFSEDEEEYRYEVVRRGERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVT
EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKAAEENTYSHDGEEFLFVMKGTAELLLEDERIALEEGDCVYFDSSLRHRLLSRDGNEVQ
HHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCEEEECHHHHHHHHHCCCCEEE
VLAVVTR
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA