| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is dinG [H]
Identifier: 78224358
GI number: 78224358
Start: 3563997
End: 3566627
Strand: Direct
Name: dinG [H]
Synonym: Gmet_3167
Alternate gene names: 78224358
Gene position: 3563997-3566627 (Clockwise)
Preceding gene: 78224357
Following gene: 78224361
Centisome position: 89.16
GC content: 66.63
Gene sequence:
>2631_bases GTGAGTGCCACAAGAAGTAATCTCTTCGGCCGAATCAGCCGGAACAGGGGGCGGAGCGATCCGCCCCTTTTTTCATTGCC CCCTCCCCCCAAACCCGATATTCTCGACCGGATGAAGCGGTACTTTTCAGAGCAGGCCATCCTCGACATGCGGGCCGCCA TCGCGGCGGCGGGGGGAAACGAAGTCTTCTTCCTGGGGCGCACCGACGAAAACCGGATCGTGACCGAGGCGGAGCCCCTG GCCCGGGGGAACCGGGACGCGGTTGCCGCCATCATGATCGCCACCAGCTTCGGCGACGTGGTGATCCACAACCACCCCTC AGGGAACCTTGACCCCTCCCAGGCCGACATCGAGATCGCATCCCTCCTGGGGAACCAGGGAGTCGGCTTTTCCATCGTGG ACAACGCCGTGGAGCGGTGCTATCAGGCGGTGGCCCCCTTTGCCCGGCGGGAGACAGAGCGGCTGTCATTCCCCGAGATC GAGCGGATTTTCGCGCCGGCCGGGGTCCTGGCAGCCAATCTCCCCGGTTACGAGCACCGGGAAGAGCAGCTCCGGATGGC CTTTGCCGTCACCGAGGCGTTCAATGACGACCGGGTGGCGGTCATCGAGGCCGGCACCGGCACCGGCAAATCCCTCGCCT ATCTCGTCCCGGCGGTGCTCTGGGCCATCCGCAACAAGGAGCGGATCGTCGTCTCCACCAACACCATCAACCTCCAGGAA CAGCTCATAAAAAAAGACATTCCCTTCCTCCAGCGCCACGCCGGGGTCCAGTTCCGGGCAGTCCTCGTGAAGGGTCGCTC CAACTACCTCTGCCTCCGGAAACTGGCCGGAGTCAAAAGCGAACCATCCCTCTTCGCCGATGACCCGGCGGCCGGGGAAC TGGAGGCGATCATCGCCTGGAGCGAAAAGACGGCCGAGGGATGCCGCAGCGATCTCTCCTTCATCCCCAAGCCGGAGACC TGGGAGGAGGTAGCCTGCGAGGCGGACCAGTGCGGCCGGATCAAGTGCCCCCTTTACGCCCGCTGCTTCTTCTACGGCGC CCGGCGCCAGGCGGCAAGCGCCGATGTCCTCGTGGTGAACCACGCGCTCCTCATGGCCGACGTGGCCCTGCGCCAGGAGA CCGGCTACCGCTCCACCGCCATCCTCCCCCCCTTCGAACGGCTCATGGTGGACGAAGGGCACCACCTGGAGGACGTGGCC ACCGGGCACCTCTCCTCTCAGGTCTCCCGCCAAGGGATCCTGAAGCTCCTGGGGCGCCTCCAGAATCCGCGCAAAGCCCA GCGGGGGCTCCTGCCCCAGCTCTCGGCCCAGCTCTCCCGGGAGGTGCCGGTGGAGCTGGACGACCTCTACCGGGACCTGG CCGAGCGGCTGGAGGAAAAGCTCATCTCCCGCACCCAGGAGCTGGCAGCCGGGGCGGTGCGGGCCATGGACGCCATCGGC CTCGCCCTCCTCTCCCACCTGAAGGGGAAGGGACCGGAGAACGGGGAAAAGAAGCTCCGGGTCACCCCGTCCCTCTTCGG CTCAAAGCTCTGGCAGGAGACCGACGACGAGGCCCGGGAGCTGGCCGCGGACCTGAACACGTTCGTGCGGGAGCTGAAGG AATTCCTCACCGGGTGCGGACGGCTCCCGGAAGCGGTCCAGGAGAAGCTCTCGGGGCTCCTCGTGGACCTTCGGGGGGTG ACGGGGCGCCTCGAAGCCTTGGCCGCGGACCTCCTCTTCTTCATCGGCCGGGACGGCGAAGTCTGCCGCTGGTTCGAGGT GAAAAAAGGGGCCAAGGGGATAGCGGTGAGGCTCTGCGCCTCCCCCCTGGAGGTGGCCGCCTCCCTCAAGCGAACTGTCT TCGACGCCTTCCGGACCGTGGTGGTCACCTCGGCCACCCTGGCGGTGGGGGAAACATTCGACTACCTGGAAGGTCGGACC GGAATCGCCCTTCTGGACCGGGGACGAGTGACGGAGCTCCTCCTCGCATCCCCCTTCGACTACGAGCGCCAGGCCTTCGT CGGTATCCCCGCCGACCTTCCCGAGCCCACGTCAAGGGGGTTCCAGGAGGCCCTGGAGGTGGCCCTCCACCGGGGGCTCG CCATCTCCAACGGCCACGCCTTCGTCCTTTTCACCTCCTACGACCTCCTCTCCCGCATCCACGGCAGGATGGCAGAGGCG CTGCGGCGCCGGGGGCTCACTCCCATGCGCCAGGGGGAGATCAACCGGCACCACCTCCTGGCCCGGTTCCGGAAGGAGCC CAACGCGGTCCTTTTCGGCACCGACTCCTTCTGGGAAGGGGTCGACGTGCAGGGGAAGGCACTGGAGCTGGTGGTCATCA CGCGACTCCCCTTCCGGGTACCGACGGAGCCGATTCTGGAGGCACGGGCCGACCACATCGCCCTCCGGGGAGGGGACCCC TTCATGGAGTACACGGTCCCCCAGGCGGTCATCAAGTTCAAGCAGGGATTTGGGAGGCTGATCCGGAGCAGGGAGGACCG GGGAGCGGTCCTGATCCTCGACAGCCGGGTGCTTTCGAAAAACTACGGGCGGTTTTTCCTCCGGTCGCTGCCGCCGGTAC GGCTTGCGGACGGCGGCAGCGGGGAGGTCTTCGGGGAGATGGAGCGGTTTTTCAGCTCTTCGCCTTCATGA
Upstream 100 bases:
>100_bases GAAAAGGCCCCCGGCAAGATCGAAGGGTTCGGCAAGGACTGGGCCCACAAGACCTGCAAAGGGTGCCACGAGCAGAAGAA GGCCGGCCCCACCAAGTGCG
Downstream 100 bases:
>100_bases GCTTCTTCGCGGCGTAGTTAAAGCACTGGAAGTAGGTGAGGTAGGAGAGGAGGAACACGGCCAGGATCATGAACTGGATC TGGGGCGCACTGGGGGCCCT
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 876; Mature: 875
Protein sequence:
>876_residues MSATRSNLFGRISRNRGRSDPPLFSLPPPPKPDILDRMKRYFSEQAILDMRAAIAAAGGNEVFFLGRTDENRIVTEAEPL ARGNRDAVAAIMIATSFGDVVIHNHPSGNLDPSQADIEIASLLGNQGVGFSIVDNAVERCYQAVAPFARRETERLSFPEI ERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAIRNKERIVVSTNTINLQE QLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPSLFADDPAAGELEAIIAWSEKTAEGCRSDLSFIPKPET WEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDVA TGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIG LALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLRGV TGRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRT GIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEA LRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDP FMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSKNYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS
Sequences:
>Translated_876_residues MSATRSNLFGRISRNRGRSDPPLFSLPPPPKPDILDRMKRYFSEQAILDMRAAIAAAGGNEVFFLGRTDENRIVTEAEPL ARGNRDAVAAIMIATSFGDVVIHNHPSGNLDPSQADIEIASLLGNQGVGFSIVDNAVERCYQAVAPFARRETERLSFPEI ERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAIRNKERIVVSTNTINLQE QLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPSLFADDPAAGELEAIIAWSEKTAEGCRSDLSFIPKPET WEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDVA TGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIG LALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLRGV TGRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRT GIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEA LRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDP FMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSKNYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS >Mature_875_residues SATRSNLFGRISRNRGRSDPPLFSLPPPPKPDILDRMKRYFSEQAILDMRAAIAAAGGNEVFFLGRTDENRIVTEAEPLA RGNRDAVAAIMIATSFGDVVIHNHPSGNLDPSQADIEIASLLGNQGVGFSIVDNAVERCYQAVAPFARRETERLSFPEIE RIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAIRNKERIVVSTNTINLQEQ LIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPSLFADDPAAGELEAIIAWSEKTAEGCRSDLSFIPKPETW EEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDVAT GHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIGL ALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLRGVT GRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRTG IALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEAL RRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDPF MEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSKNYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=270, Percent_Identity=40, Blast_Score=189, Evalue=9e-49, Organism=Escherichia coli, GI1787018, Length=258, Percent_Identity=32.9457364341085, Blast_Score=108, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 96783; Mature: 96652
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: PS01302 RADC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATRSNLFGRISRNRGRSDPPLFSLPPPPKPDILDRMKRYFSEQAILDMRAAIAAAGGN CCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC EVFFLGRTDENRIVTEAEPLARGNRDAVAAIMIATSFGDVVIHNHPSGNLDPSQADIEIA EEEEEECCCCCCEEECCCHHHCCCCHHEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHH SLLGNQGVGFSIVDNAVERCYQAVAPFARRETERLSFPEIERIFAPAGVLAANLPGYEHR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCH EEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAIRNKERIVVSTNTINLQE HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHH QLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPSLFADDPAAGELEAIIAW HHHHHCCCHHHHHCCCEEEEEEEECCCCEEHHHHHCCCCCCCCCCCCCCCCCCEEEEEEE SEKTAEGCRSDLSFIPKPETWEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVN CHHHHHHHHHHCCCCCCCCCHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHH HALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDVATGHLSSQVSRQGILKLLGRL HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC QNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIG CCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCG HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC RLPEAVQEKLSGLLVDLRGVTGRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCA CCHHHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECC SPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRTGIALLDRGRVTELLLASPFD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHCCCCC YERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEA CCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECHHHHHHHHHHHHHH LRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVDVQGKALELVVITRLPFRV HHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCC PTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSK CCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHC NYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS CHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure SATRSNLFGRISRNRGRSDPPLFSLPPPPKPDILDRMKRYFSEQAILDMRAAIAAAGGN CCCHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC EVFFLGRTDENRIVTEAEPLARGNRDAVAAIMIATSFGDVVIHNHPSGNLDPSQADIEIA EEEEEECCCCCCEEECCCHHHCCCCHHEEEEEEEECCCCEEEECCCCCCCCCCHHHHHHH SLLGNQGVGFSIVDNAVERCYQAVAPFARRETERLSFPEIERIFAPAGVLAANLPGYEHR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCH EEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAIRNKERIVVSTNTINLQE HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHH QLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPSLFADDPAAGELEAIIAW HHHHHCCCHHHHHCCCEEEEEEEECCCCEEHHHHHCCCCCCCCCCCCCCCCCCEEEEEEE SEKTAEGCRSDLSFIPKPETWEEVACEADQCGRIKCPLYARCFFYGARRQAASADVLVVN CHHHHHHHHHHCCCCCCCCCHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHH HALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDVATGHLSSQVSRQGILKLLGRL HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC QNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLEEKLISRTQELAAGAVRAMDAIG CCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEARELAADLNTFVRELKEFLTGCG HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC RLPEAVQEKLSGLLVDLRGVTGRLEALAADLLFFIGRDGEVCRWFEVKKGAKGIAVRLCA CCHHHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECC SPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRTGIALLDRGRVTELLLASPFD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHCCCCC YERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVLFTSYDLLSRIHGRMAEA CCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECHHHHHHHHHHHHHH LRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVDVQGKALELVVITRLPFRV HHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCC PTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGFGRLIRSREDRGAVLILDSRVLSK CCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHC NYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS CHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]