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The map label for this gene is vapI [H]

Identifier: 78224194

GI number: 78224194

Start: 3386200

End: 3386502

Strand: Reverse

Name: vapI [H]

Synonym: Gmet_3001

Alternate gene names: 78224194

Gene position: 3386502-3386200 (Counterclockwise)

Preceding gene: 78224195

Following gene: 78224193

Centisome position: 84.72

GC content: 52.81

Gene sequence:

>303_bases
ATGAGCAAAAGAGATTTTCCGCCCATTCATCCCGGCGAAATCCTGAGAGAAGAGTTTCTTGTTCCGTTGGGCATCAGTCA
GTATCGGCTCGCCAAGGAAATTCATGTGCCTGCGCGGCGTATAAATGAAATCGTTCTGGAAAAGCGCGGCATCTCGGCAG
ACACCGCGCTTCGCCTTGGCCGGTATTTCGGAACTACCGCCCAATTCTGGATCAACTTGCAGGCACACTACGACCTTGAA
GTGGCGCGTGACGCCGAAGACACATTGGAGCAGGAAATTAAGCCTTTCAACAAGGCCGCCTGA

Upstream 100 bases:

>100_bases
AATACACCGGACGCTCGTTCCTTGCGCCGGTGATTATTTCGTTGGCGGGACGGTAACGCCTTTGAAGTGGAGATTGTGGA
CTACCATTAGGGAGTGAGTC

Downstream 100 bases:

>100_bases
GTCCAACTGTAACTTCCAGTGCACCGTCGCTATCGCTCCAACCCCTGAAGCCTGACGCGGGTTGCCGTGCTCTTTCTGGA
ACAGTTCCCTTTCCCGCCAT

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MSKRDFPPIHPGEILREEFLVPLGISQYRLAKEIHVPARRINEIVLEKRGISADTALRLGRYFGTTAQFWINLQAHYDLE
VARDAEDTLEQEIKPFNKAA

Sequences:

>Translated_100_residues
MSKRDFPPIHPGEILREEFLVPLGISQYRLAKEIHVPARRINEIVLEKRGISADTALRLGRYFGTTAQFWINLQAHYDLE
VARDAEDTLEQEIKPFNKAA
>Mature_99_residues
SKRDFPPIHPGEILREEFLVPLGISQYRLAKEIHVPARRINEIVLEKRGISADTALRLGRYFGTTAQFWINLQAHYDLEV
ARDAEDTLEQEIKPFNKAA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=79, Percent_Identity=36.7088607594937, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 11531; Mature: 11400

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRDFPPIHPGEILREEFLVPLGISQYRLAKEIHVPARRINEIVLEKRGISADTALRLG
CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
RYFGTTAQFWINLQAHYDLEVARDAEDTLEQEIKPFNKAA
HHHCCCEEEEEEEECCCCEEECCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKRDFPPIHPGEILREEFLVPLGISQYRLAKEIHVPARRINEIVLEKRGISADTALRLG
CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
RYFGTTAQFWINLQAHYDLEVARDAEDTLEQEIKPFNKAA
HHHCCCEEEEEEEECCCCEEECCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]