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The map label for this gene is ycfS [H]

Identifier: 78224173

GI number: 78224173

Start: 3366707

End: 3367609

Strand: Reverse

Name: ycfS [H]

Synonym: Gmet_2980

Alternate gene names: 78224173

Gene position: 3367609-3366707 (Counterclockwise)

Preceding gene: 78224174

Following gene: 78224170

Centisome position: 84.24

GC content: 68.11

Gene sequence:

>903_bases
ATGGCGGCACCGTGGGGCAATGGCGGGAATCGGTGGCGCCGGGAGGTTGCGCTGTTGGTGTGGGCGGCGCTTCTGGGGGC
GCGGTTGGCAGGGGCGACCATCTTTCCGGGGCCGGCCGAGGTGGTGGGACGGAGTTCGCTTCAGGAGGCCCGGAAGGGAG
AATCGCTCATCGAGGTCGCCCGGAGCCACGACCTCGGTTTCAATGAGATTGCGGCGGCCAATCCCGGTCTCGACCCCTTT
GTCCCAACCGCGGGCAGCCCCGTCACCATCCCCGGACGGCACGTGGTTCCGGCGGCGGTGGTGCCGGGACGGCTGGTGGT
GAATCTGTCCGAACTTCGCCTCTACTTCGTTCCGGAAGGGGGGACGCCGCGCATTGTCTCCTTTCCGGTCGGGACAGGAA
GCGAGGGGAAGGAGACCCCCCTCGGCGTCTACCGGGTGACGGAGAAGCGCGCCAATCCCGCCTGGCACGTTCCTCTCTCC
ATACGCCAGGAGCGGCCTCGCCTACCCGCCGTGGTTCCCCCGGGACCCGACAATCCTCTCGGAAGCCACGCCCTGCGGCT
TACCGACGACGGCCTGATGATTCACGGCACCAACCGGCCATGGGGGGTTGGTCGTAACGTGAGCCACGGCTGTATCCGGC
TCTATCCCGAGGATATCCCCGTTCTTTTCCGGCTGGTTTCCCTCGGGACGCCGGTAGCCATCGTCCGGGAGCCGGTGAAG
GTGGGTGATCAGGAGGGGCGGCTCCTCATCGAGGTCCATCGGGATGAGGGAGCCGGGATCGACTACGCGGCGGAGGCGAC
CCGCCTAATCATGGCGCGGGGGAGGCTCGACCGGGTGGATTTCCCGCGTCTCTTCCGGGCCCTGGCCGAAAAGCGGGGGG
TGCCGGTCGACATCGGCCGGTGA

Upstream 100 bases:

>100_bases
CTTCACCATGGTGGCCGCGGAGGAGAAGAAGATCAGGACGAACCCGGCGGCCCGGACCACGGATCTGCTGAAGACGGTGT
TCGGGCAGTAGGAAAGGTCC

Downstream 100 bases:

>100_bases
CCCGCTAATTCGGTAACAACAGAAGTTGAATAACACGGAGAGACGGAGAGCACGGAGAACCCAATAGAATAGAATAAGTT
TTTTGCCGACCCCACAGGTG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAAPWGNGGNRWRREVALLVWAALLGARLAGATIFPGPAEVVGRSSLQEARKGESLIEVARSHDLGFNEIAAANPGLDPF
VPTAGSPVTIPGRHVVPAAVVPGRLVVNLSELRLYFVPEGGTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLS
IRQERPRLPAVVPPGPDNPLGSHALRLTDDGLMIHGTNRPWGVGRNVSHGCIRLYPEDIPVLFRLVSLGTPVAIVREPVK
VGDQEGRLLIEVHRDEGAGIDYAAEATRLIMARGRLDRVDFPRLFRALAEKRGVPVDIGR

Sequences:

>Translated_300_residues
MAAPWGNGGNRWRREVALLVWAALLGARLAGATIFPGPAEVVGRSSLQEARKGESLIEVARSHDLGFNEIAAANPGLDPF
VPTAGSPVTIPGRHVVPAAVVPGRLVVNLSELRLYFVPEGGTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLS
IRQERPRLPAVVPPGPDNPLGSHALRLTDDGLMIHGTNRPWGVGRNVSHGCIRLYPEDIPVLFRLVSLGTPVAIVREPVK
VGDQEGRLLIEVHRDEGAGIDYAAEATRLIMARGRLDRVDFPRLFRALAEKRGVPVDIGR
>Mature_299_residues
AAPWGNGGNRWRREVALLVWAALLGARLAGATIFPGPAEVVGRSSLQEARKGESLIEVARSHDLGFNEIAAANPGLDPFV
PTAGSPVTIPGRHVVPAAVVPGRLVVNLSELRLYFVPEGGTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLSI
RQERPRLPAVVPPGPDNPLGSHALRLTDDGLMIHGTNRPWGVGRNVSHGCIRLYPEDIPVLFRLVSLGTPVAIVREPVKV
GDQEGRLLIEVHRDEGAGIDYAAEATRLIMARGRLDRVDFPRLFRALAEKRGVPVDIGR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=280, Percent_Identity=37.5, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787040, Length=295, Percent_Identity=35.2542372881356, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1787968, Length=300, Percent_Identity=36.3333333333333, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788299, Length=305, Percent_Identity=35.0819672131148, Blast_Score=140, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 32346; Mature: 32215

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPWGNGGNRWRREVALLVWAALLGARLAGATIFPGPAEVVGRSSLQEARKGESLIEVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCHHHHHHH
RSHDLGFNEIAAANPGLDPFVPTAGSPVTIPGRHVVPAAVVPGRLVVNLSELRLYFVPEG
HHCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCEEEEEEEHEEEEEEECC
GTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLSIRQERPRLPAVVPPGPDNPL
CCCCEEEEECCCCCCCCCCCCEEEEEEHHCCCCEEECCCHHHCCCCCCCEEECCCCCCCC
GSHALRLTDDGLMIHGTNRPWGVGRNVSHGCIRLYPEDIPVLFRLVSLGTPVAIVREPVK
CCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCHHH
VGDQEGRLLIEVHRDEGAGIDYAAEATRLIMARGRLDRVDFPRLFRALAEKRGVPVDIGR
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure 
AAPWGNGGNRWRREVALLVWAALLGARLAGATIFPGPAEVVGRSSLQEARKGESLIEVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCHHHHHHH
RSHDLGFNEIAAANPGLDPFVPTAGSPVTIPGRHVVPAAVVPGRLVVNLSELRLYFVPEG
HHCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCEEEEEEEHEEEEEEECC
GTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLSIRQERPRLPAVVPPGPDNPL
CCCCEEEEECCCCCCCCCCCCEEEEEEHHCCCCEEECCCHHHCCCCCCCEEECCCCCCCC
GSHALRLTDDGLMIHGTNRPWGVGRNVSHGCIRLYPEDIPVLFRLVSLGTPVAIVREPVK
CCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHCHHH
VGDQEGRLLIEVHRDEGAGIDYAAEATRLIMARGRLDRVDFPRLFRALAEKRGVPVDIGR
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]