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The map label for this gene is 78224066

Identifier: 78224066

GI number: 78224066

Start: 3252275

End: 3252505

Strand: Reverse

Name: 78224066

Synonym: Gmet_2870

Alternate gene names: NA

Gene position: 3252505-3252275 (Counterclockwise)

Preceding gene: 78224067

Following gene: 78224065

Centisome position: 81.37

GC content: 54.55

Gene sequence:

>231_bases
ATGAAAGAGCTTGTAGAGACCATCGCAAAGGCGCTTGTGGACGACCCCTCCCAGGTGAGAACCACCGAGGAGATGGAAGA
GGATACAATGGTCATCAAGCTGACCGTGGCCAAAGAGGACATGGGACGAATCATCGGCAAAGAGGGGCGGACAGCAAAGG
CAATCCGGACCCTGCTCAACGCGGTGTCCACCAAGGACAACAAGAAAGCCGTGCTGAAGATCGTCGAATAA

Upstream 100 bases:

>100_bases
GTCTCTGGGAGAAATTCACGACCAAGCCTGCATAATTAACACGTTGTAACGCTGCTTCGTTCCCGGTCCGCCGGTCATTC
CCATTGCAGAGGTTACCGAC

Downstream 100 bases:

>100_bases
TGCTGGGCAGTACCGATCTCGTGTTGCTCGGCAAGGTCGTCGCAACACACGGCATCAGGGGACAACTGTCAGTCGTCCCC
TTTTCGGGCGAGTTCAGCAC

Product: KH, type 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MKELVETIAKALVDDPSQVRTTEEMEEDTMVIKLTVAKEDMGRIIGKEGRTAKAIRTLLNAVSTKDNKKAVLKIVE

Sequences:

>Translated_76_residues
MKELVETIAKALVDDPSQVRTTEEMEEDTMVIKLTVAKEDMGRIIGKEGRTAKAIRTLLNAVSTKDNKKAVLKIVE
>Mature_76_residues
MKELVETIAKALVDDPSQVRTTEEMEEDTMVIKLTVAKEDMGRIIGKEGRTAKAIRTLLNAVSTKDNKKAVLKIVE

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 8443; Mature: 8443

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELVETIAKALVDDPSQVRTTEEMEEDTMVIKLTVAKEDMGRIIGKEGRTAKAIRTLLN
CHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHH
AVSTKDNKKAVLKIVE
HHCCCCCCHHHHEECC
>Mature Secondary Structure
MKELVETIAKALVDDPSQVRTTEEMEEDTMVIKLTVAKEDMGRIIGKEGRTAKAIRTLLN
CHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHH
AVSTKDNKKAVLKIVE
HHCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]