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The map label for this gene is rimM

Identifier: 78224065

GI number: 78224065

Start: 3251754

End: 3252275

Strand: Reverse

Name: rimM

Synonym: Gmet_2869

Alternate gene names: 78224065

Gene position: 3252275-3251754 (Counterclockwise)

Preceding gene: 78224066

Following gene: 78224064

Centisome position: 81.36

GC content: 54.6

Gene sequence:

>522_bases
ATGCTGGGCAGTACCGATCTCGTGTTGCTCGGCAAGGTCGTCGCAACACACGGCATCAGGGGACAACTGTCAGTCGTCCC
CTTTTCGGGCGAGTTCAGCACCATTCTTTCGATGCAGACAGTTTACCTCAGTGGGCCGGACAACCGTAAGGAAAGCTTTG
AAGTGGACCGCGCGGCTGTCCATCGCAATCGGGTTCTCCTGACACTGAAGGGATTCGCGAATATAAACGAAGTTCTCCAC
CTGGTCGGGCGTGAGTTGTTCGCTCGACGGGACCAGTTTCCCCCCCTTGACGAGGGGGAGTTCTACTGGTGTGACCTCAT
TGGCCTTTCGGTAACGACAAGTGAAGGGTTGTCCCTTGGCCGTATCGAAGAGATTATTGCCACGGGAAGTAACGACGTCT
ATGTGGTCAGGGACGGGGAGAGGGAATATCTGATTCCGGCCCTTGAAGACATAGTTGTCGGTGTTGATTTGGATAAGGGA
ATCATGACCGTCAGCCCCACAGAGGGGCTGCTTGATCTATGA

Upstream 100 bases:

>100_bases
TCATCGGCAAAGAGGGGCGGACAGCAAAGGCAATCCGGACCCTGCTCAACGCGGTGTCCACCAAGGACAACAAGAAAGCC
GTGCTGAAGATCGTCGAATA

Downstream 100 bases:

>100_bases
AATTCGATATTTTGACCCTTTTCCCTGCCATGTTCGAGGGACCGCTTACCGAAAGCATCATCCGGCGGGCAGTCGAGAAA
GGGCTCCTTGATATCCGGTT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRVLLTLKGFANINEVLH
LVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEIIATGSNDVYVVRDGEREYLIPALEDIVVGVDLDKG
IMTVSPTEGLLDL

Sequences:

>Translated_173_residues
MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRVLLTLKGFANINEVLH
LVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEIIATGSNDVYVVRDGEREYLIPALEDIVVGVDLDKG
IMTVSPTEGLLDL
>Mature_173_residues
MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRVLLTLKGFANINEVLH
LVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEIIATGSNDVYVVRDGEREYLIPALEDIVVGVDLDKG
IMTVSPTEGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=159, Percent_Identity=30.8176100628931, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_GEOMG (Q39RN7)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_385812.1
- ProteinModelPortal:   Q39RN7
- SMR:   Q39RN7
- STRING:   Q39RN7
- GeneID:   3738926
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_2869
- NMPDR:   fig|269799.3.peg.3039
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   IASHRKH
- PhylomeDB:   Q39RN7
- ProtClustDB:   CLSK827971
- BioCyc:   GMET269799:GMET_2869-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19007; Mature: 19007

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAV
CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHEEEEEEEEEECCCCCCHHHHHHHHHH
HRNRVLLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCHH
RIEEIIATGSNDVYVVRDGEREYLIPALEDIVVGVDLDKGIMTVSPTEGLLDL
HHHHHHHCCCCCEEEEECCCCEEECCCHHHEEEEEECCCCEEEECCCCCCCCC
>Mature Secondary Structure
MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAV
CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHEEEEEEEEEECCCCCCHHHHHHHHHH
HRNRVLLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCHH
RIEEIIATGSNDVYVVRDGEREYLIPALEDIVVGVDLDKGIMTVSPTEGLLDL
HHHHHHHCCCCCEEEEECCCCEEECCCHHHEEEEEECCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA