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The map label for this gene is ytfM [C]

Identifier: 78224004

GI number: 78224004

Start: 3169835

End: 3171646

Strand: Direct

Name: ytfM [C]

Synonym: Gmet_2808

Alternate gene names: 78224004

Gene position: 3169835-3171646 (Clockwise)

Preceding gene: 78223999

Following gene: 78224005

Centisome position: 79.3

GC content: 66.23

Gene sequence:

>1812_bases
ATGGCCATCCAAGCGCCTCCCCCCATATCAACCACCCGCTTCCGGAATATCCTCGTCCGCGCAGGGTTGGCGCCTGCCGT
GTTCCTCTGGATTCTGCTCGGCAGCGCTCTCCTCCTCCGCGCCGCGGAACCGGTGGAAACGGTGGTGGAAGGGGTTGAGG
GGGAGGCCCTGGAAAACGTGAAGAAGGCCCTCGCCCTCCCCTACGGCCTCGTGCGGGACGGAAAAGTGGACACCCAGTGG
CTGGAGCGCTTCGCGGGCCAGGCCCAGGAACGGGTCCGGTCGGCCCTGGAGCCCTTCGGCTACTACCGGGCGCGGATTAC
TACCTCCCTGGTGGAAACTCCGGAGGGGAACTACCGCCTCAAGGCCGACATCGACCCCGGCCCCCCGGTTATCGTCTCCA
GCGTTCAGGTTACCCTGGCCGGCGCGGGGAGCGCCAACAAGACCCTGACGGGGCTGGCCGGCCAATTCCCCCTCCATACC
GGCGATCTCCTCGTCCAGCCCAACTACGAGGAGGCCAAGGGGGTCCTTCGCTCCAAGGCCCTGGCCCTCGGCTACCTGGA
TGCCGCATTCTCCACCCACGAGATCCGCATCTCCCCCGACCGGACCAAGGCCGACATCCGGCTCGTCCTGGACACAGGCA
CCCTCTACCGCTTCGGCGAGGTGACCATCACCGGGGCCCCCCGCTATCCCGACGAATTCCTCCGCCGCTACGTCACCATC
AAGCCGGGCCGCCCCTTCTCCTACGCCAGGCTGGGCGAAACCCAGCTCAACTTCACCAATACCGAGCGTTTCGCCGAGGT
GATCGTCACCCCCGACCGGGAACACGCCCACGACCACCAGGTCCCAGTGACCATCGCCCTCAAGCCCGGCCACACCCAGC
GGCTGCAGCCGGGAATCGGCTACGGCTCCGACACCGGGGCCCGGGGTTCCCTCACCTATCGTCACCTGAACGTCCTGGGC
CTGGGGCACGAGTTCCAATCCCAGCTCTATCTCTCGGAGCGCCTCCAGGGGATCGCCGCCAACTATATCATCCCGTCGCC
CCGGGACACCCGGACCTACTCCGCGCTGCAGCTCAACCTTCAGAAGGAGGATGTGAGCACCTACATAAGCCGCCTTGCGG
CCCTGGAAGGGAGCGTGAACCGGAGCATGGGAAGGGGAAAACTCGGCACCGTCTTCCTGCGGGTCCACCAGGAGGGGTTC
ACCATTGCCGGCGAGGACTCCAGCTCCCTCCTGGTCCTGCCGGGCATCCGCTACTCCGAGCACCGCTTCGACAACCTGGT
CCGCCCCACCAGGGGGTATCGCTTCATGGTCGAGGGAAGCGGCACCCACCAGTACCTGGGGTCAGACACGGGGCTCATCC
AGGTTCGGGCCGAGGGGAGCACCATCGTCCCGCTCCCCTGGCGCCTCTCCCTTCTCAGCCGGGTTGCAGGCGGTCTCACC
TTCCTCAACGACCCCCTGGCCGAGTTGCCGGCATCGTTGCGGTTCTTCGCCGGCGGCGACCGGAGCGTGCGGGGCTACTC
CTACAAATCCCTGGGGCCCCGGAACGCTTCGGGGGAAGTAATCGGCGGCAGGAACCTGCTTGAAGGGAGCATCGAACTCC
AACGGGCCCTCTTCACCAACTGGGGGGTCTCCCTCTTCTACGACGCGGGGAACGCCTTCAACGACCTGACCAACATCCGC
CTCTACCAGGGGGCGGGGTTCGGCATCCACTACTATACCCTCGTGGGCGCCATCAACCTCTACGTGGCCCGGCAAATCGG
TGTTGACAACCCGGCCTTCCGCATCCACCTGACCATAGGGTTCGAGCTGTGA

Upstream 100 bases:

>100_bases
TGTGTCGCTCCCGTCGCCCGCAGGCAGATGAAGGGATTGCCATGAGCCCCGTCAGCCGGTACACTTGTGACCGGAAACCA
CCACCCGGGACAGGACAACA

Downstream 100 bases:

>100_bases
AACGGGCCGTTGCCTACCTTCTCGTGGTGCTGATTCTGGGAGCCTTCCTGGCCGGAGGGATTGCCAGCCGCTGGCTCCTG
GGGACTCCGGAGGGGGCCCG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 602

Protein sequence:

>603_residues
MAIQAPPPISTTRFRNILVRAGLAPAVFLWILLGSALLLRAAEPVETVVEGVEGEALENVKKALALPYGLVRDGKVDTQW
LERFAGQAQERVRSALEPFGYYRARITTSLVETPEGNYRLKADIDPGPPVIVSSVQVTLAGAGSANKTLTGLAGQFPLHT
GDLLVQPNYEEAKGVLRSKALALGYLDAAFSTHEIRISPDRTKADIRLVLDTGTLYRFGEVTITGAPRYPDEFLRRYVTI
KPGRPFSYARLGETQLNFTNTERFAEVIVTPDREHAHDHQVPVTIALKPGHTQRLQPGIGYGSDTGARGSLTYRHLNVLG
LGHEFQSQLYLSERLQGIAANYIIPSPRDTRTYSALQLNLQKEDVSTYISRLAALEGSVNRSMGRGKLGTVFLRVHQEGF
TIAGEDSSSLLVLPGIRYSEHRFDNLVRPTRGYRFMVEGSGTHQYLGSDTGLIQVRAEGSTIVPLPWRLSLLSRVAGGLT
FLNDPLAELPASLRFFAGGDRSVRGYSYKSLGPRNASGEVIGGRNLLEGSIELQRALFTNWGVSLFYDAGNAFNDLTNIR
LYQGAGFGIHYYTLVGAINLYVARQIGVDNPAFRIHLTIGFEL

Sequences:

>Translated_603_residues
MAIQAPPPISTTRFRNILVRAGLAPAVFLWILLGSALLLRAAEPVETVVEGVEGEALENVKKALALPYGLVRDGKVDTQW
LERFAGQAQERVRSALEPFGYYRARITTSLVETPEGNYRLKADIDPGPPVIVSSVQVTLAGAGSANKTLTGLAGQFPLHT
GDLLVQPNYEEAKGVLRSKALALGYLDAAFSTHEIRISPDRTKADIRLVLDTGTLYRFGEVTITGAPRYPDEFLRRYVTI
KPGRPFSYARLGETQLNFTNTERFAEVIVTPDREHAHDHQVPVTIALKPGHTQRLQPGIGYGSDTGARGSLTYRHLNVLG
LGHEFQSQLYLSERLQGIAANYIIPSPRDTRTYSALQLNLQKEDVSTYISRLAALEGSVNRSMGRGKLGTVFLRVHQEGF
TIAGEDSSSLLVLPGIRYSEHRFDNLVRPTRGYRFMVEGSGTHQYLGSDTGLIQVRAEGSTIVPLPWRLSLLSRVAGGLT
FLNDPLAELPASLRFFAGGDRSVRGYSYKSLGPRNASGEVIGGRNLLEGSIELQRALFTNWGVSLFYDAGNAFNDLTNIR
LYQGAGFGIHYYTLVGAINLYVARQIGVDNPAFRIHLTIGFEL
>Mature_602_residues
AIQAPPPISTTRFRNILVRAGLAPAVFLWILLGSALLLRAAEPVETVVEGVEGEALENVKKALALPYGLVRDGKVDTQWL
ERFAGQAQERVRSALEPFGYYRARITTSLVETPEGNYRLKADIDPGPPVIVSSVQVTLAGAGSANKTLTGLAGQFPLHTG
DLLVQPNYEEAKGVLRSKALALGYLDAAFSTHEIRISPDRTKADIRLVLDTGTLYRFGEVTITGAPRYPDEFLRRYVTIK
PGRPFSYARLGETQLNFTNTERFAEVIVTPDREHAHDHQVPVTIALKPGHTQRLQPGIGYGSDTGARGSLTYRHLNVLGL
GHEFQSQLYLSERLQGIAANYIIPSPRDTRTYSALQLNLQKEDVSTYISRLAALEGSVNRSMGRGKLGTVFLRVHQEGFT
IAGEDSSSLLVLPGIRYSEHRFDNLVRPTRGYRFMVEGSGTHQYLGSDTGLIQVRAEGSTIVPLPWRLSLLSRVAGGLTF
LNDPLAELPASLRFFAGGDRSVRGYSYKSLGPRNASGEVIGGRNLLEGSIELQRALFTNWGVSLFYDAGNAFNDLTNIRL
YQGAGFGIHYYTLVGAINLYVARQIGVDNPAFRIHLTIGFEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=584, Percent_Identity=29.2808219178082, Blast_Score=209, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 66185; Mature: 66054

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQAPPPISTTRFRNILVRAGLAPAVFLWILLGSALLLRAAEPVETVVEGVEGEALENV
CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHH
KKALALPYGLVRDGKVDTQWLERFAGQAQERVRSALEPFGYYRARITTSLVETPEGNYRL
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCEEE
KADIDPGPPVIVSSVQVTLAGAGSANKTLTGLAGQFPLHTGDLLVQPNYEEAKGVLRSKA
EEECCCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHH
LALGYLDAAFSTHEIRISPDRTKADIRLVLDTGTLYRFGEVTITGAPRYPDEFLRRYVTI
HHEEEHHHCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHEEEE
KPGRPFSYARLGETQLNFTNTERFAEVIVTPDREHAHDHQVPVTIALKPGHTQRLQPGIG
CCCCCCCHHCCCCCEECCCCHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
YGSDTGARGSLTYRHLNVLGLGHEFQSQLYLSERLQGIAANYIIPSPRDTRTYSALQLNL
CCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHEECEECCCCCCCCCEEEEEEEE
QKEDVSTYISRLAALEGSVNRSMGRGKLGTVFLRVHQEGFTIAGEDSSSLLVLPGIRYSE
CHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEECCCCEEECCCCCCEEEECCCCCCH
HRFDNLVRPTRGYRFMVEGSGTHQYLGSDTGLIQVRAEGSTIVPLPWRLSLLSRVAGGLT
HHHHHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCEEECCCHHHHHHHHHHCCHH
FLNDPLAELPASLRFFAGGDRSVRGYSYKSLGPRNASGEVIGGRNLLEGSIELQRALFTN
CCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHC
WGVSLFYDAGNAFNDLTNIRLYQGAGFGIHYYTLVGAINLYVARQIGVDNPAFRIHLTIG
CCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEEECCCCCCEEEEEEEEE
FEL
EEC
>Mature Secondary Structure 
AIQAPPPISTTRFRNILVRAGLAPAVFLWILLGSALLLRAAEPVETVVEGVEGEALENV
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHH
KKALALPYGLVRDGKVDTQWLERFAGQAQERVRSALEPFGYYRARITTSLVETPEGNYRL
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCEEE
KADIDPGPPVIVSSVQVTLAGAGSANKTLTGLAGQFPLHTGDLLVQPNYEEAKGVLRSKA
EEECCCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHH
LALGYLDAAFSTHEIRISPDRTKADIRLVLDTGTLYRFGEVTITGAPRYPDEFLRRYVTI
HHEEEHHHCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHEEEE
KPGRPFSYARLGETQLNFTNTERFAEVIVTPDREHAHDHQVPVTIALKPGHTQRLQPGIG
CCCCCCCHHCCCCCEECCCCHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
YGSDTGARGSLTYRHLNVLGLGHEFQSQLYLSERLQGIAANYIIPSPRDTRTYSALQLNL
CCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHEECEECCCCCCCCCEEEEEEEE
QKEDVSTYISRLAALEGSVNRSMGRGKLGTVFLRVHQEGFTIAGEDSSSLLVLPGIRYSE
CHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEECCCCEEECCCCCCEEEECCCCCCH
HRFDNLVRPTRGYRFMVEGSGTHQYLGSDTGLIQVRAEGSTIVPLPWRLSLLSRVAGGLT
HHHHHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCEEECCCHHHHHHHHHHCCHH
FLNDPLAELPASLRFFAGGDRSVRGYSYKSLGPRNASGEVIGGRNLLEGSIELQRALFTN
CCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHC
WGVSLFYDAGNAFNDLTNIRLYQGAGFGIHYYTLVGAINLYVARQIGVDNPAFRIHLTIG
CCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEEECCCCCCEEEEEEEEE
FEL
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]