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The map label for this gene is ydeM [C]

Identifier: 78223930

GI number: 78223930

Start: 3089465

End: 3090805

Strand: Reverse

Name: ydeM [C]

Synonym: Gmet_2734

Alternate gene names: 78223930

Gene position: 3090805-3089465 (Counterclockwise)

Preceding gene: 78223937

Following gene: 78223928

Centisome position: 77.32

GC content: 68.23

Gene sequence:

>1341_bases
ATGATCCTCTCCCGCCACGTGAAAGTCTTCCCCTGCACGGAGCAGCCGGGCCATCTCATTCTCTTCTCCTGCCGCACCGG
AGCGGTGCTCCGCGTACCCGCCCCCCTCCTCGAAGCCGCCCGCGGCGGCACCCTTTCGCCTAAGCCCGCCGAAACCCTCT
CCCGCCACGGCTTTCTCGCCGAAGACCCGGGAACGGAGCAGCGGGAGATGCTCGCCTGGTTCGACCGGATCAACGCGCGG
CGGCGCCGCTGCAGCGCCGTGGTGGTCCTGACCCGGGCCTGCAACCTCGCCTGCCCTTACTGCTTCGAGGCGAATCAGCC
GAGCCTGCGCCAGATGGACGGGGAGACCGCCGACCTCTTCGTATCCTTGGTGGAGCGGGAACACCTGGCCCGGGGACGGA
GGGTCTCGCTCAATTTCTACGGCGGCGAGGCGCTGCTGCGCCCCGACCTGATCCGCCGGATCGCCGGACCGCTGCGGGCG
ACCGGCGGCGACCGGTTTTCCTTCAGCCTGGTCACCAACGGTACCCTCCTCACCCGGACGCTGGTGAAAGATCTTCTCCC
CCTCGGCCTGGACGGCGCCAAGGTGACCCTCGACGGCCCGCCGCAAATCCATGACCGGCTGCGTCCCTTTGTCTCGGGAG
AGGGGAGCTTTGCCGCGATCATCGCCAACCTGCGGGAGGTGTGCGGCCTGATCGGCATCGCCATCGGCGGGAACTACACC
CGCGACACCTGGCGGGAGTTCCCCCAACTCCTCGACATTCTCCCTGTCGCGGGGCTCACCCCGGAGCGGGTCCGTCTCGT
CAGGTTCGATCCGGTGATCGGCCGGGAGGGTGTTGCGGGGCTTCCCGACTTTTCGGAAGGGTGCGGCGGACTCACTGAGC
CGTGGCTCGTGGAGGCGTCCCTCGTCCTTCGGGAGGAGATCGTGAAACGAGGGTACCTGACGTCTAAACCGGCCCCGGCC
GCCTGCATGGTGGAGTTCGACACCGATCTGGTGGTCGACACCGATGGGGCCATCTACCGCTGTCCCGCCTTCATCGGCCG
GCCGGCGTTCGTTGCCGGCCATCTACGAAACGGCGCCGGCAGCGCAGGGGACGCGTACGGGATGGACGCCTGGAAGCAGG
AGGAGTGCCTCGACTGCGCCTACCTCCCCCTCTGCTTCGGTGGCTGCCGCTTCATGAGGCTGGTGGAAACGGGTGCGGTG
GACGGTGTGGCATGCCAGCGGGAGTACCTGGACGCGACCCTTGAGGCGATGGTGCGGCGAGGCGAATATCCCCTCACCCG
CCCTCCGGGCACCCTCTCCCACGGGGAGAGGGAATTACACCCCTCGCCCTGCCCCCTATGA

Upstream 100 bases:

>100_bases
TGCACGGTGAGTGTTGCTTTCTTCTTTTAACGGATGCTTGCGATGGCGTGCGGTGTATTTAGCCGGGGGACGGGTTCCCC
CGGCTCTTTTGGGGGTAGCC

Downstream 100 bases:

>100_bases
CAGCATCCGGTCCAGTTCGTCGAAATCCAGCACCTTTTCCGCCTGGGCCTTGACGAGATCGATCTTCTCGGCGTCTTCGG
CGCTGATCTTGGAGACGTGG

Product: radical SAM family protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Transcriptional Regulator; Radical Sam Domain Protein; Heme Biosynthesis; Fe-S Oxidoreductase; Radical SAM

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MILSRHVKVFPCTEQPGHLILFSCRTGAVLRVPAPLLEAARGGTLSPKPAETLSRHGFLAEDPGTEQREMLAWFDRINAR
RRRCSAVVVLTRACNLACPYCFEANQPSLRQMDGETADLFVSLVEREHLARGRRVSLNFYGGEALLRPDLIRRIAGPLRA
TGGDRFSFSLVTNGTLLTRTLVKDLLPLGLDGAKVTLDGPPQIHDRLRPFVSGEGSFAAIIANLREVCGLIGIAIGGNYT
RDTWREFPQLLDILPVAGLTPERVRLVRFDPVIGREGVAGLPDFSEGCGGLTEPWLVEASLVLREEIVKRGYLTSKPAPA
ACMVEFDTDLVVDTDGAIYRCPAFIGRPAFVAGHLRNGAGSAGDAYGMDAWKQEECLDCAYLPLCFGGCRFMRLVETGAV
DGVACQREYLDATLEAMVRRGEYPLTRPPGTLSHGERELHPSPCPL

Sequences:

>Translated_446_residues
MILSRHVKVFPCTEQPGHLILFSCRTGAVLRVPAPLLEAARGGTLSPKPAETLSRHGFLAEDPGTEQREMLAWFDRINAR
RRRCSAVVVLTRACNLACPYCFEANQPSLRQMDGETADLFVSLVEREHLARGRRVSLNFYGGEALLRPDLIRRIAGPLRA
TGGDRFSFSLVTNGTLLTRTLVKDLLPLGLDGAKVTLDGPPQIHDRLRPFVSGEGSFAAIIANLREVCGLIGIAIGGNYT
RDTWREFPQLLDILPVAGLTPERVRLVRFDPVIGREGVAGLPDFSEGCGGLTEPWLVEASLVLREEIVKRGYLTSKPAPA
ACMVEFDTDLVVDTDGAIYRCPAFIGRPAFVAGHLRNGAGSAGDAYGMDAWKQEECLDCAYLPLCFGGCRFMRLVETGAV
DGVACQREYLDATLEAMVRRGEYPLTRPPGTLSHGERELHPSPCPL
>Mature_446_residues
MILSRHVKVFPCTEQPGHLILFSCRTGAVLRVPAPLLEAARGGTLSPKPAETLSRHGFLAEDPGTEQREMLAWFDRINAR
RRRCSAVVVLTRACNLACPYCFEANQPSLRQMDGETADLFVSLVEREHLARGRRVSLNFYGGEALLRPDLIRRIAGPLRA
TGGDRFSFSLVTNGTLLTRTLVKDLLPLGLDGAKVTLDGPPQIHDRLRPFVSGEGSFAAIIANLREVCGLIGIAIGGNYT
RDTWREFPQLLDILPVAGLTPERVRLVRFDPVIGREGVAGLPDFSEGCGGLTEPWLVEASLVLREEIVKRGYLTSKPAPA
ACMVEFDTDLVVDTDGAIYRCPAFIGRPAFVAGHLRNGAGSAGDAYGMDAWKQEECLDCAYLPLCFGGCRFMRLVETGAV
DGVACQREYLDATLEAMVRRGEYPLTRPPGTLSHGERELHPSPCPL

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48726; Mature: 48726

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSRHVKVFPCTEQPGHLILFSCRTGAVLRVPAPLLEAARGGTLSPKPAETLSRHGFLA
CCCCCCEEEEECCCCCCCEEEEEECCCCEEECCHHHHHHHCCCCCCCCCHHHHHHCCCCC
EDPGTEQREMLAWFDRINARRRRCSAVVVLTRACNLACPYCFEANQPSLRQMDGETADLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHCCCCHHHHH
VSLVEREHLARGRRVSLNFYGGEALLRPDLIRRIAGPLRATGGDRFSFSLVTNGTLLTRT
HHHHHHHHHCCCCEEEEEEECCCHHCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHH
LVKDLLPLGLDGAKVTLDGPPQIHDRLRPFVSGEGSFAAIIANLREVCGLIGIAIGGNYT
HHHHHHHCCCCCCEEEECCCHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHEEHCCCCCC
RDTWREFPQLLDILPVAGLTPERVRLVRFDPVIGREGVAGLPDFSEGCGGLTEPWLVEAS
HHHHHHHHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
LVLREEIVKRGYLTSKPAPAACMVEFDTDLVVDTDGAIYRCPAFIGRPAFVAGHLRNGAG
HHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCEEECHHHHCCCHHEEHHCCCCCC
SAGDAYGMDAWKQEECLDCAYLPLCFGGCRFMRLVETGAVDGVACQREYLDATLEAMVRR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GEYPLTRPPGTLSHGERELHPSPCPL
CCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILSRHVKVFPCTEQPGHLILFSCRTGAVLRVPAPLLEAARGGTLSPKPAETLSRHGFLA
CCCCCCEEEEECCCCCCCEEEEEECCCCEEECCHHHHHHHCCCCCCCCCHHHHHHCCCCC
EDPGTEQREMLAWFDRINARRRRCSAVVVLTRACNLACPYCFEANQPSLRQMDGETADLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHCCCCHHHHH
VSLVEREHLARGRRVSLNFYGGEALLRPDLIRRIAGPLRATGGDRFSFSLVTNGTLLTRT
HHHHHHHHHCCCCEEEEEEECCCHHCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHH
LVKDLLPLGLDGAKVTLDGPPQIHDRLRPFVSGEGSFAAIIANLREVCGLIGIAIGGNYT
HHHHHHHCCCCCCEEEECCCHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHEEHCCCCCC
RDTWREFPQLLDILPVAGLTPERVRLVRFDPVIGREGVAGLPDFSEGCGGLTEPWLVEAS
HHHHHHHHHHHHHHCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
LVLREEIVKRGYLTSKPAPAACMVEFDTDLVVDTDGAIYRCPAFIGRPAFVAGHLRNGAG
HHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCEEECHHHHCCCHHEEHHCCCCCC
SAGDAYGMDAWKQEECLDCAYLPLCFGGCRFMRLVETGAVDGVACQREYLDATLEAMVRR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GEYPLTRPPGTLSHGERELHPSPCPL
CCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA