Click here to switch to the map view.

The map label for this gene is 78223877

Identifier: 78223877

GI number: 78223877

Start: 3028832

End: 3029674

Strand: Reverse

Name: 78223877

Synonym: Gmet_2681

Alternate gene names: NA

Gene position: 3029674-3028832 (Counterclockwise)

Preceding gene: 78223878

Following gene: 78223876

Centisome position: 75.79

GC content: 62.28

Gene sequence:

>843_bases
TTGTCTGACGCGCTCACCCCCGGGAAAGGGGGAACATCCATTGGTATCCTGCTGCGAGAGACCCGCGAGTCCCGTGGGGA
GTCGCGGGAGGACGCCGCCCGCGTCACCCGCATCGGCAAGAATTATCTTGCCGCCCTCGAAGAGGAATCCTTTGACAAGC
TTCCGAGTCCCGCCTATGTAAAGGGGTTTCTGCGGGTGTACGGAAAGCACCTGGGACTCTCTCCGGATGACTTGGTCGCC
AGGTACGAGGAGCAACTGGTTCCTGCACCTGCCACGGAGCAGGAGGAGGACGAGGGAGGGGCGCCGCCTGTTGCCCGCGT
AGCGATCCCCCCAATCCGCAACCGCTGGATGATTCCCCTGGTTCTCCTTGCCCTGGTGCTCGTCACCGCTACGATTATTC
CTCAGAGAGAGCCCGCACCGGTGCGGCCTGTGCCCGAGCCGGTTCCCGCCAGGGTGCTTCTTGCCCCGCCACCTGTTCAG
TCACCCTTATCCTCGGTTGCAGCGGCTCCGCTGTCAAAGCTGCAGGAGGCACCGGCGGAATCCGCTGAGGCAGCTTCCCC
GGAAGCGGCCGCTCCTTCAACCAAGCCGGGTGGGATGGTTCTCAAGCTCAAGGTGAACCAGGATTGCTGGCTGGATATAA
CCATCGACGGCGCCGTCTCCCAGCAGTACGACCTGAAGGCCGGCGATCTGATCGAATGGAAAGGAGAGCGGGTTTTTTCG
CTCGATCTCGGCAATGCCGGCGGGGTGGAGGCCGAATTCAACGGCAAGGTGCTTCCATCGTTCGGAGAGGCAGGCAAAAC
CGCCCATGTGACACTTCCGGCAGAATATACTGCGGAGCAGTAG

Upstream 100 bases:

>100_bases
TGCAGCCGATGCGTTCCGCGAGGCGATCCGGATAGCACCCGATTCGGAGAAGGGGCGTCTTTCCCGGGAATATCTGGAAT
CAATGCGCTGAGAGGTTCAC

Downstream 100 bases:

>100_bases
TCTCGGCAAAACTACGGCACACTGGAGATTATTTCAAGGAGAGGGTTTTTCATGCATATGGTACGCTGCAGAAAGTGCGG
AAGAGTAATGAAGAGTGAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSDALTPGKGGTSIGILLRETRESRGESREDAARVTRIGKNYLAALEEESFDKLPSPAYVKGFLRVYGKHLGLSPDDLVA
RYEEQLVPAPATEQEEDEGGAPPVARVAIPPIRNRWMIPLVLLALVLVTATIIPQREPAPVRPVPEPVPARVLLAPPPVQ
SPLSSVAAAPLSKLQEAPAESAEAASPEAAAPSTKPGGMVLKLKVNQDCWLDITIDGAVSQQYDLKAGDLIEWKGERVFS
LDLGNAGGVEAEFNGKVLPSFGEAGKTAHVTLPAEYTAEQ

Sequences:

>Translated_280_residues
MSDALTPGKGGTSIGILLRETRESRGESREDAARVTRIGKNYLAALEEESFDKLPSPAYVKGFLRVYGKHLGLSPDDLVA
RYEEQLVPAPATEQEEDEGGAPPVARVAIPPIRNRWMIPLVLLALVLVTATIIPQREPAPVRPVPEPVPARVLLAPPPVQ
SPLSSVAAAPLSKLQEAPAESAEAASPEAAAPSTKPGGMVLKLKVNQDCWLDITIDGAVSQQYDLKAGDLIEWKGERVFS
LDLGNAGGVEAEFNGKVLPSFGEAGKTAHVTLPAEYTAEQ
>Mature_279_residues
SDALTPGKGGTSIGILLRETRESRGESREDAARVTRIGKNYLAALEEESFDKLPSPAYVKGFLRVYGKHLGLSPDDLVAR
YEEQLVPAPATEQEEDEGGAPPVARVAIPPIRNRWMIPLVLLALVLVTATIIPQREPAPVRPVPEPVPARVLLAPPPVQS
PLSSVAAAPLSKLQEAPAESAEAASPEAAAPSTKPGGMVLKLKVNQDCWLDITIDGAVSQQYDLKAGDLIEWKGERVFSL
DLGNAGGVEAEFNGKVLPSFGEAGKTAHVTLPAEYTAEQ

Specific function: Unknown

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29777; Mature: 29646

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDALTPGKGGTSIGILLRETRESRGESREDAARVTRIGKNYLAALEEESFDKLPSPAYV
CCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KGFLRVYGKHLGLSPDDLVARYEEQLVPAPATEQEEDEGGAPPVARVAIPPIRNRWMIPL
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEHHH
VLLALVLVTATIIPQREPAPVRPVPEPVPARVLLAPPPVQSPLSSVAAAPLSKLQEAPAE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
SAEAASPEAAAPSTKPGGMVLKLKVNQDCWLDITIDGAVSQQYDLKAGDLIEWKGERVFS
HHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEE
LDLGNAGGVEAEFNGKVLPSFGEAGKTAHVTLPAEYTAEQ
EECCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SDALTPGKGGTSIGILLRETRESRGESREDAARVTRIGKNYLAALEEESFDKLPSPAYV
CCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KGFLRVYGKHLGLSPDDLVARYEEQLVPAPATEQEEDEGGAPPVARVAIPPIRNRWMIPL
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEHHH
VLLALVLVTATIIPQREPAPVRPVPEPVPARVLLAPPPVQSPLSSVAAAPLSKLQEAPAE
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
SAEAASPEAAAPSTKPGGMVLKLKVNQDCWLDITIDGAVSQQYDLKAGDLIEWKGERVFS
HHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEE
LDLGNAGGVEAEFNGKVLPSFGEAGKTAHVTLPAEYTAEQ
EECCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA