Click here to switch to the map view.

The map label for this gene is ykpA [H]

Identifier: 78223827

GI number: 78223827

Start: 2977012

End: 2978649

Strand: Reverse

Name: ykpA [H]

Synonym: Gmet_2630

Alternate gene names: 78223827

Gene position: 2978649-2977012 (Counterclockwise)

Preceding gene: 78223829

Following gene: 78223826

Centisome position: 74.51

GC content: 61.72

Gene sequence:

>1638_bases
ATGATCAGCGCATCGAACGTTACCCTCTCCTATGGAAAGAGGGTTCTCTTCAAGGACGTTAACATCAAGTTTACCCCCGG
CAACTGCTACGGCCTCATCGGCGCCAACGGCGCCGGGAAATCCACCTTCCTCAAGATCCTCGCCGGCGAGGTGGAGGCGG
ACAAGGGGGAGATCTCCGTGGGCTCAGGCGAGCGGATCGCGGTGCTGCGCCAGGACCAGTTCGCCTTTGACGAGGAGGTG
GTCTTCAATACCGTCATCATGGGGCACGAGCGGCTCTACAAGGTGATGGCTGAGCGGGAGGAGATCTACTCCAAGGGTGA
TTTCACCGAGGAGGACGGCATCCGCTCGGCGGAGTTGGAGGGGGAGTTCGCCGAGATGAACGGCTACGAGGCCGAGAGCG
AGGCGGCGGTGCTCCTGAACGGCCTCGGCATCCCCGAGGAATTGCGCCATAAAAAGATGAAGGAGCTGGAACCGGGAGAG
AAGGTGCGGGTGCTCCTGGCCCAGGCCCTCTTCGGCAATCCCGACGTGCTCCTTCTGGACGAGCCCACCAACAACCTGGA
CCTGAAATCCATCACCTGGCTGGAGGATTTCCTCTCCCGCTTCCAGAACACGGTCATCGTGGTCTCCCACGACCGGCATT
TCCTGAACCAGATCTGCACCCACGTGGCCGACATCGACTTCGGCATGATCAAGGTCTACGTGGGGAACTACGACTTCTGG
TACCAGGCGAGCCAGCTGACCCTGCGGCAGAAGCAGGAGGAGAACCGCAAGTCCACCGAGAAGGCCAACGAGCTGAAGGA
GTTCATCCAGCGCTTCAGCTCCAACGCCTCCAAGGCCAAGCAGGCCACCTCCCGGAAGAAGCTCCTGGAGAAGCTGACCC
TGGAGGAGATGCCGGTTTCCTCCCGCAAGTACCCCTACGTGGTCTTCAAGCCCGAGCGGGCCTGCGGCGACATCATCCTG
GAGATCCAGGGGCTCTCGAAGTCTGTGGATGGTGTGCAGGTGCTTAACAACCTGGACCTCATCGTCCGCAAGGGGGACAA
GATCGCCTTCGTGGGGGCTAACAGCCAGGCCAAGACCACCCTTTTCCAGATTCTGACCGGGGAACTGGAGCCGGATGCGG
GAACCTTCCGCTGGGGGGTGACCATCACCCATTCCTATTTCCCCAAGGAGAACAGCGCCTTTTTCGAGGGGGACCTGAAC
CTCATCGAGTGGCTTGGCCAATACTCACCTCCCACTGAAGGGGAGAGCTTCGCACGGGGGTTCCTGGGGCGGATGCTCTT
CTCCGGGGACGAGGCCACCAAGAAGACCAGTGTGCTCTCCGGGGGGGAGCGGGTCCGCTGCATGCTCTCCCGGATGATGC
TCACGGGCGCCAACGTCCTCATGCTGGACGAGCCCACCAACCACCTGGACCTGGAGTCCATCACCGCCCTCAACAACGGG
CTCATCGCCTACCCGGAGGTGATCCTCTTCGCCTCCCACGACCACGAGTTCGTCTCCACCGTGTCGAACCGGATCGTGGA
GCTCACCCCTGGCGGGGTCATCGACCGGGTCATGAGTTTCGACGACTTCCTGGAGGATGAGGGGGTTGCCCGGGAGCGGG
ACGAGTTGTATCACGGCCACGTGGAGGCGAGCCTGTAA

Upstream 100 bases:

>100_bases
CTGGCGGCGGAAATGGTATAACCAGTCAGCACGTGAACCACAGGGTCACATCCCTGTGGTTTTTTATTTTACCCGAACAA
AAGAAGGAGTCACCCAGAGC

Downstream 100 bases:

>100_bases
TCGGAGCGGGAATTGCCCGGTCGAATAATAATAAAATACACCCTTTGGCGTGACAAAATCCCCCTTTTGCAAGGGGGATT
TTTTTTGAAATCATAATAAA

Product: ABC transporter-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MISASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILAGEVEADKGEISVGSGERIAVLRQDQFAFDEEV
VFNTVIMGHERLYKVMAEREEIYSKGDFTEEDGIRSAELEGEFAEMNGYEAESEAAVLLNGLGIPEELRHKKMKELEPGE
KVRVLLAQALFGNPDVLLLDEPTNNLDLKSITWLEDFLSRFQNTVIVVSHDRHFLNQICTHVADIDFGMIKVYVGNYDFW
YQASQLTLRQKQEENRKSTEKANELKEFIQRFSSNASKAKQATSRKKLLEKLTLEEMPVSSRKYPYVVFKPERACGDIIL
EIQGLSKSVDGVQVLNNLDLIVRKGDKIAFVGANSQAKTTLFQILTGELEPDAGTFRWGVTITHSYFPKENSAFFEGDLN
LIEWLGQYSPPTEGESFARGFLGRMLFSGDEATKKTSVLSGGERVRCMLSRMMLTGANVLMLDEPTNHLDLESITALNNG
LIAYPEVILFASHDHEFVSTVSNRIVELTPGGVIDRVMSFDDFLEDEGVARERDELYHGHVEASL

Sequences:

>Translated_545_residues
MISASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILAGEVEADKGEISVGSGERIAVLRQDQFAFDEEV
VFNTVIMGHERLYKVMAEREEIYSKGDFTEEDGIRSAELEGEFAEMNGYEAESEAAVLLNGLGIPEELRHKKMKELEPGE
KVRVLLAQALFGNPDVLLLDEPTNNLDLKSITWLEDFLSRFQNTVIVVSHDRHFLNQICTHVADIDFGMIKVYVGNYDFW
YQASQLTLRQKQEENRKSTEKANELKEFIQRFSSNASKAKQATSRKKLLEKLTLEEMPVSSRKYPYVVFKPERACGDIIL
EIQGLSKSVDGVQVLNNLDLIVRKGDKIAFVGANSQAKTTLFQILTGELEPDAGTFRWGVTITHSYFPKENSAFFEGDLN
LIEWLGQYSPPTEGESFARGFLGRMLFSGDEATKKTSVLSGGERVRCMLSRMMLTGANVLMLDEPTNHLDLESITALNNG
LIAYPEVILFASHDHEFVSTVSNRIVELTPGGVIDRVMSFDDFLEDEGVARERDELYHGHVEASL
>Mature_545_residues
MISASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILAGEVEADKGEISVGSGERIAVLRQDQFAFDEEV
VFNTVIMGHERLYKVMAEREEIYSKGDFTEEDGIRSAELEGEFAEMNGYEAESEAAVLLNGLGIPEELRHKKMKELEPGE
KVRVLLAQALFGNPDVLLLDEPTNNLDLKSITWLEDFLSRFQNTVIVVSHDRHFLNQICTHVADIDFGMIKVYVGNYDFW
YQASQLTLRQKQEENRKSTEKANELKEFIQRFSSNASKAKQATSRKKLLEKLTLEEMPVSSRKYPYVVFKPERACGDIIL
EIQGLSKSVDGVQVLNNLDLIVRKGDKIAFVGANSQAKTTLFQILTGELEPDAGTFRWGVTITHSYFPKENSAFFEGDLN
LIEWLGQYSPPTEGESFARGFLGRMLFSGDEATKKTSVLSGGERVRCMLSRMMLTGANVLMLDEPTNHLDLESITALNNG
LIAYPEVILFASHDHEFVSTVSNRIVELTPGGVIDRVMSFDDFLEDEGVARERDELYHGHVEASL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=30.8988764044944, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI10947137, Length=511, Percent_Identity=31.3111545988258, Blast_Score=218, Evalue=2e-56,
Organism=Homo sapiens, GI27881506, Length=511, Percent_Identity=31.3111545988258, Blast_Score=218, Evalue=2e-56,
Organism=Homo sapiens, GI10947135, Length=526, Percent_Identity=27.9467680608365, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI69354671, Length=526, Percent_Identity=27.9467680608365, Blast_Score=176, Evalue=4e-44,
Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=46.6918714555766, Blast_Score=524, Evalue=1e-150,
Organism=Escherichia coli, GI1789751, Length=527, Percent_Identity=32.6375711574953, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=30, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1787182, Length=526, Percent_Identity=30.6083650190114, Blast_Score=215, Evalue=7e-57,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=27.8538812785388, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=27.1186440677966, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789864, Length=242, Percent_Identity=23.9669421487603, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=23.2673267326733, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=26.8085106382979, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=24.8995983935743, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=532, Percent_Identity=31.015037593985, Blast_Score=231, Evalue=5e-61,
Organism=Caenorhabditis elegans, GI17555318, Length=547, Percent_Identity=27.6051188299817, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17559834, Length=536, Percent_Identity=26.3059701492537, Blast_Score=190, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI212646699, Length=220, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=234, Percent_Identity=26.4957264957265, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=214, Percent_Identity=26.1682242990654, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=222, Percent_Identity=28.3783783783784, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=522, Percent_Identity=32.5670498084291, Blast_Score=234, Evalue=2e-62,
Organism=Saccharomyces cerevisiae, GI6321121, Length=527, Percent_Identity=30.3605313092979, Blast_Score=216, Evalue=9e-57,
Organism=Saccharomyces cerevisiae, GI6325030, Length=376, Percent_Identity=25.531914893617, Blast_Score=110, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6324314, Length=406, Percent_Identity=23.8916256157635, Blast_Score=100, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6323278, Length=406, Percent_Identity=24.1379310344828, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24666836, Length=527, Percent_Identity=30.3605313092979, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI24642252, Length=529, Percent_Identity=27.5992438563327, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI18859989, Length=529, Percent_Identity=27.5992438563327, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24641342, Length=540, Percent_Identity=29.0740740740741, Blast_Score=207, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61024; Mature: 61024

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILAGEVEADKGEISV
CCCCCCEEHHCCCEEEEEECEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
GSGERIAVLRQDQFAFDEEVVFNTVIMGHERLYKVMAEREEIYSKGDFTEEDGIRSAELE
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GEFAEMNGYEAESEAAVLLNGLGIPEELRHKKMKELEPGEKVRVLLAQALFGNPDVLLLD
CCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE
EPTNNLDLKSITWLEDFLSRFQNTVIVVSHDRHFLNQICTHVADIDFGMIKVYVGNYDFW
CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEE
YQASQLTLRQKQEENRKSTEKANELKEFIQRFSSNASKAKQATSRKKLLEKLTLEEMPVS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SRKYPYVVFKPERACGDIILEIQGLSKSVDGVQVLNNLDLIVRKGDKIAFVGANSQAKTT
CCCCCEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCCEEEEECCCEEEEEECCCCHHHH
LFQILTGELEPDAGTFRWGVTITHSYFPKENSAFFEGDLNLIEWLGQYSPPTEGESFARG
HHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCHHHHHH
FLGRMLFSGDEATKKTSVLSGGERVRCMLSRMMLTGANVLMLDEPTNHLDLESITALNNG
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCC
LIAYPEVILFASHDHEFVSTVSNRIVELTPGGVIDRVMSFDDFLEDEGVARERDELYHGH
EEECCEEEEEECCCHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCE
VEASL
EECCC
>Mature Secondary Structure
MISASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILAGEVEADKGEISV
CCCCCCEEHHCCCEEEEEECEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
GSGERIAVLRQDQFAFDEEVVFNTVIMGHERLYKVMAEREEIYSKGDFTEEDGIRSAELE
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GEFAEMNGYEAESEAAVLLNGLGIPEELRHKKMKELEPGEKVRVLLAQALFGNPDVLLLD
CCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE
EPTNNLDLKSITWLEDFLSRFQNTVIVVSHDRHFLNQICTHVADIDFGMIKVYVGNYDFW
CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEE
YQASQLTLRQKQEENRKSTEKANELKEFIQRFSSNASKAKQATSRKKLLEKLTLEEMPVS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SRKYPYVVFKPERACGDIILEIQGLSKSVDGVQVLNNLDLIVRKGDKIAFVGANSQAKTT
CCCCCEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCCEEEEECCCEEEEEECCCCHHHH
LFQILTGELEPDAGTFRWGVTITHSYFPKENSAFFEGDLNLIEWLGQYSPPTEGESFARG
HHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCHHHHHH
FLGRMLFSGDEATKKTSVLSGGERVRCMLSRMMLTGANVLMLDEPTNHLDLESITALNNG
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCC
LIAYPEVILFASHDHEFVSTVSNRIVELTPGGVIDRVMSFDDFLEDEGVARERDELYHGH
EEECCEEEEEECCCHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCE
VEASL
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]