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The map label for this gene is 78223809

Identifier: 78223809

GI number: 78223809

Start: 2959324

End: 2959884

Strand: Reverse

Name: 78223809

Synonym: Gmet_2612

Alternate gene names: NA

Gene position: 2959884-2959324 (Counterclockwise)

Preceding gene: 78223812

Following gene: 78223808

Centisome position: 74.04

GC content: 62.03

Gene sequence:

>561_bases
ATGAGAATCAAGGAGGAGCGGCTGGACTCCACTGAGATATTAAACCGATTTCTGGCGGGGATTGAGCGACGGGCCTTCCG
CATGGCTCGACTTGCCACATCGGACGATGACGAGGCCCTCGACTTGGTGCATGATGCCATGCTTGCCTTCGTGAACCGCT
ATGCCGGCAAGCCCGAGGGGGAGTGGGCGCCGCTGTTCCACCGGACCCTCCAGAACCGCATCGTTGACTGGCACCGCCGC
ACGGGGGTCAGGAACCGTTTCCGTGCATGGTTTTTGGGGGGAGAGAGCGAGGAGGAGAGTGATCCCCTGGAAAACGTGGC
TGATCTCTCCTCTCCCGATCCTTTGGCGAGCCTCCAGCGGCACGATTTGGGCGAAGCCATCGAGTCGGCGGTCCGCCGGC
TTCCTCTCCGGCAGCGGCAGGCCTTCCTTCTGCGGGCCTGGGAAGGGCTTGACACGGCCCAGACGGCCTTTGCCATGGGA
TGTTCGGAGGGAAGCGTGAAGACCCATTATTCGCGCGCGGTCCATACGTTGCGCGACTATCTTGAGGAGTACGCACCATG
A

Upstream 100 bases:

>100_bases
AAAAGTTTAAATCCTGGCATCTTAAAGTCAATGGACCCCTCTGCGTTTGATGTGATGTCAACTCCTTTAACATTCGTGCG
TTTTTGATTAGTATAAGGCG

Downstream 100 bases:

>100_bases
GCCCTGAAGGACGTAACGAGCGGCTGGCGGCAATGGTTAAAGAACATCTTGACGCACGTGCGGACGCCCTGGATGACCGG
ACGGCCGCCCGTCTCCGGAC

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRIKEERLDSTEILNRFLAGIERRAFRMARLATSDDDEALDLVHDAMLAFVNRYAGKPEGEWAPLFHRTLQNRIVDWHRR
TGVRNRFRAWFLGGESEEESDPLENVADLSSPDPLASLQRHDLGEAIESAVRRLPLRQRQAFLLRAWEGLDTAQTAFAMG
CSEGSVKTHYSRAVHTLRDYLEEYAP

Sequences:

>Translated_186_residues
MRIKEERLDSTEILNRFLAGIERRAFRMARLATSDDDEALDLVHDAMLAFVNRYAGKPEGEWAPLFHRTLQNRIVDWHRR
TGVRNRFRAWFLGGESEEESDPLENVADLSSPDPLASLQRHDLGEAIESAVRRLPLRQRQAFLLRAWEGLDTAQTAFAMG
CSEGSVKTHYSRAVHTLRDYLEEYAP
>Mature_186_residues
MRIKEERLDSTEILNRFLAGIERRAFRMARLATSDDDEALDLVHDAMLAFVNRYAGKPEGEWAPLFHRTLQNRIVDWHRR
TGVRNRFRAWFLGGESEEESDPLENVADLSSPDPLASLQRHDLGEAIESAVRRLPLRQRQAFLLRAWEGLDTAQTAFAMG
CSEGSVKTHYSRAVHTLRDYLEEYAP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21410; Mature: 21410

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKEERLDSTEILNRFLAGIERRAFRMARLATSDDDEALDLVHDAMLAFVNRYAGKPEG
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EWAPLFHRTLQNRIVDWHRRTGVRNRFRAWFLGGESEEESDPLENVADLSSPDPLASLQR
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
HDLGEAIESAVRRLPLRQRQAFLLRAWEGLDTAQTAFAMGCSEGSVKTHYSRAVHTLRDY
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LEEYAP
HHHHCC
>Mature Secondary Structure
MRIKEERLDSTEILNRFLAGIERRAFRMARLATSDDDEALDLVHDAMLAFVNRYAGKPEG
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
EWAPLFHRTLQNRIVDWHRRTGVRNRFRAWFLGGESEEESDPLENVADLSSPDPLASLQR
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
HDLGEAIESAVRRLPLRQRQAFLLRAWEGLDTAQTAFAMGCSEGSVKTHYSRAVHTLRDY
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LEEYAP
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA