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The map label for this gene is ydiF [H]

Identifier: 78223742

GI number: 78223742

Start: 2888176

End: 2890101

Strand: Reverse

Name: ydiF [H]

Synonym: Gmet_2545

Alternate gene names: 78223742

Gene position: 2890101-2888176 (Counterclockwise)

Preceding gene: 78223747

Following gene: 78223741

Centisome position: 72.3

GC content: 65.47

Gene sequence:

>1926_bases
ATGCTCCATCTCAAGAACCTCTCCAAGGACTTCGCGGGAAGGCCGCTCTTCACCGGCATCAACTGGCACCTGAAAAAGGG
TGAGCGGGTAGGCCTCGTGGGGGAGAACGGCGCCGGCAAGTCGACCCTCATGAAAATCGTCGCCGGGCTCGTGGAGCATT
CGGCCGGCGAGATGATCTTCGCCAAGGGTGCCACGGTCGGCTACCTCCCCCAGGACGGCATCGTCACCCGCGGAAGGCCG
CTTCTGGCCGAGGTGATGACGGCCCTGGACGACCTCCAGCGGATGGAACGGGAACTGGCCGACCTTACCCGGCGCCTTGA
GGAAATTCCCCACGATGACCCGGAGCACGGTGCGCTTCTTGATCGTTACGGGCACCTCCAGGAGGAGTTCCGGCTGCGGG
GTGGCTACGCCATGGAGGCGGAGGCATGCCGGGTGCTGGACGGCCTCGGCTTTCTCCCCGCTGACCGGGGGCGCGACTGC
GGCGAGTTCTCCGGCGGGTGGCAGATGCGGATCGCTCTGGCCAAGCTCCTCCTGAAAAAGCCCAACGTGCTCCTGCTGGA
CGAGCCCACCAACCACCTGGACATCGAGGCCCGCAACTGGCTGGAGGGGTACCTGTGCGAGTATCCCCACTCGGTGATTC
TCGTCTCCCATGACCGCTTCTTCATGGACCAGGTCTGCCACCGGATCACCGAGGTCTGGAACAGCGTCCTCACCGACTAC
CACTGCTCCTACAGCCGCTATCTGGTCCAGCGGGAGGAGCGGGTGGCGGCCCTGCGGGAGGCGAAGCGGCGCCAGGACGA
GGAGGTCCAGAAGATCGAGGACTTCATCAGCCGGTTCCGCTACAAGGCCGACAAGGCGTCCCTGGTCCAGTCCCGTATCA
AGCAACTGGAGAAGATCGAGCGGATCGTCCTCCCTCCGGAGCGCAAGAAAATCCGCTTCCGGTTCCCCGATCCCCCGGCC
AGCGGCCGGATCGCCATGGAGCTTGCCGGCGTGGTGAAGGCCTACGGCCCCAACGTGGTCCTGAACGGCGTTGATCTCAC
CGTGGAGAAGGGGGAGCGGATCGCCCTGGTGGGGCACAACGGCGCCGGCAAGTCAACCCTCATGGGAATTATGGCGGGAA
AACCCTTCGAGGGAGGCGAGCGGATCGTGGGGCACAACGTGGCCCTCGACTACTTTGCCCAGGACCAGGCCCAGGTTCTC
GACAGCGACAAGAGCGTCCACGACGAGCTCCTTGCCGACGCCCCCTTTGCCATGGTGCCGCAGCTGCGGGACATCCTCGG
CGCCTTCCTCTTCTCCGGGGACGACATCCACAAGAAGGTGGCGGTCCTCTCGGGGGGTGAACGGAACCGCCTGGCCCTGG
CCAAGATGCTCCTGCGCCCTTCGAACCTGCTCCTCATGGATGAGCCCACCAACCACCTGGACCTCTTCAGCAAGGACGTG
CTCCTGGACGCCCTCAAGACCTTCCCCGGCACTGTGGTCTTCGTCTCCCACGACCGCTACTTCATCGACGGCCTCGCCAC
CCGGGTGGTGGAGGTGGCAGGGGGGCAGCTCACCAGCTACCACGGCGACTACGAGTACTATCTCCAGAAGAAGGCCGCGG
TTGATGGTCAGATTTCCCCGGTCCCCGGTCCCCGGTCCCCGGTCCCGGATTCCGTGCCGGAATCAAAAGAAGAGCGGCTG
CGCCAGCGGGAGGAGGAGAAGTCCCGTCAGCGGGACGAGAAGCGGCGCCAGAAGCGGCTGGAAGAGCTGGAGACGGCCAT
CGCCGCGGAGGAGGAGCGTCTTGCCGAGTTGGAGGCGCGGATGGCCGACCCCGCCTTCTTTCAGGATCTGGAAGCGGCCC
GGCAGGGTGGGGAAGAGCACGCCGCCCTGACGGCACGGATTGCCGGATTGTATGAGGAGTGGGAAACCGTCGGTGCCGAG
GGGTAG

Upstream 100 bases:

>100_bases
TTGCGGTCATTGAGGGACGCGGAATGTTAGTGAGAACATTGACAAGGCCGATTTGCCCCCCCTACAATGGCGCCATCACT
CCAACACGGAACGGAACTCC

Downstream 100 bases:

>100_bases
AGCCGCTCTCCGGCGCTATCCCCGCGACAGGGCTCGTTTCCCGCGTCGTTCCTTGACAGGAGCGGCCTCAGCGGCTAGTC
TGATTATGTAGCCGCCAGCC

Product: ABC transporter-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MLHLKNLSKDFAGRPLFTGINWHLKKGERVGLVGENGAGKSTLMKIVAGLVEHSAGEMIFAKGATVGYLPQDGIVTRGRP
LLAEVMTALDDLQRMERELADLTRRLEEIPHDDPEHGALLDRYGHLQEEFRLRGGYAMEAEACRVLDGLGFLPADRGRDC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLCEYPHSVILVSHDRFFMDQVCHRITEVWNSVLTDY
HCSYSRYLVQREERVAALREAKRRQDEEVQKIEDFISRFRYKADKASLVQSRIKQLEKIERIVLPPERKKIRFRFPDPPA
SGRIAMELAGVVKAYGPNVVLNGVDLTVEKGERIALVGHNGAGKSTLMGIMAGKPFEGGERIVGHNVALDYFAQDQAQVL
DSDKSVHDELLADAPFAMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLFSKDV
LLDALKTFPGTVVFVSHDRYFIDGLATRVVEVAGGQLTSYHGDYEYYLQKKAAVDGQISPVPGPRSPVPDSVPESKEERL
RQREEEKSRQRDEKRRQKRLEELETAIAAEEERLAELEARMADPAFFQDLEAARQGGEEHAALTARIAGLYEEWETVGAE
G

Sequences:

>Translated_641_residues
MLHLKNLSKDFAGRPLFTGINWHLKKGERVGLVGENGAGKSTLMKIVAGLVEHSAGEMIFAKGATVGYLPQDGIVTRGRP
LLAEVMTALDDLQRMERELADLTRRLEEIPHDDPEHGALLDRYGHLQEEFRLRGGYAMEAEACRVLDGLGFLPADRGRDC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLCEYPHSVILVSHDRFFMDQVCHRITEVWNSVLTDY
HCSYSRYLVQREERVAALREAKRRQDEEVQKIEDFISRFRYKADKASLVQSRIKQLEKIERIVLPPERKKIRFRFPDPPA
SGRIAMELAGVVKAYGPNVVLNGVDLTVEKGERIALVGHNGAGKSTLMGIMAGKPFEGGERIVGHNVALDYFAQDQAQVL
DSDKSVHDELLADAPFAMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLFSKDV
LLDALKTFPGTVVFVSHDRYFIDGLATRVVEVAGGQLTSYHGDYEYYLQKKAAVDGQISPVPGPRSPVPDSVPESKEERL
RQREEEKSRQRDEKRRQKRLEELETAIAAEEERLAELEARMADPAFFQDLEAARQGGEEHAALTARIAGLYEEWETVGAE
G
>Mature_641_residues
MLHLKNLSKDFAGRPLFTGINWHLKKGERVGLVGENGAGKSTLMKIVAGLVEHSAGEMIFAKGATVGYLPQDGIVTRGRP
LLAEVMTALDDLQRMERELADLTRRLEEIPHDDPEHGALLDRYGHLQEEFRLRGGYAMEAEACRVLDGLGFLPADRGRDC
GEFSGGWQMRIALAKLLLKKPNVLLLDEPTNHLDIEARNWLEGYLCEYPHSVILVSHDRFFMDQVCHRITEVWNSVLTDY
HCSYSRYLVQREERVAALREAKRRQDEEVQKIEDFISRFRYKADKASLVQSRIKQLEKIERIVLPPERKKIRFRFPDPPA
SGRIAMELAGVVKAYGPNVVLNGVDLTVEKGERIALVGHNGAGKSTLMGIMAGKPFEGGERIVGHNVALDYFAQDQAQVL
DSDKSVHDELLADAPFAMVPQLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLFSKDV
LLDALKTFPGTVVFVSHDRYFIDGLATRVVEVAGGQLTSYHGDYEYYLQKKAAVDGQISPVPGPRSPVPDSVPESKEERL
RQREEEKSRQRDEKRRQKRLEELETAIAAEEERLAELEARMADPAFFQDLEAARQGGEEHAALTARIAGLYEEWETVGAE
G

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=33.457249070632, Blast_Score=270, Evalue=4e-72,
Organism=Homo sapiens, GI27881506, Length=549, Percent_Identity=32.4225865209472, Blast_Score=230, Evalue=3e-60,
Organism=Homo sapiens, GI10947137, Length=549, Percent_Identity=32.4225865209472, Blast_Score=230, Evalue=3e-60,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=30.3308823529412, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=30.3308823529412, Blast_Score=190, Evalue=3e-48,
Organism=Escherichia coli, GI1789751, Length=619, Percent_Identity=34.4103392568659, Blast_Score=316, Evalue=3e-87,
Organism=Escherichia coli, GI1787041, Length=540, Percent_Identity=35.3703703703704, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI1787182, Length=650, Percent_Identity=31.3846153846154, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=32.2033898305085, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1788506, Length=222, Percent_Identity=30.1801801801802, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=30.2083333333333, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787792, Length=196, Percent_Identity=32.1428571428571, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789593, Length=296, Percent_Identity=26.6891891891892, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=29.2079207920792, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1787712, Length=264, Percent_Identity=25, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=29.1479820627803, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=26.5700483091787, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788165, Length=186, Percent_Identity=31.7204301075269, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=533, Percent_Identity=33.0206378986867, Blast_Score=257, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17555318, Length=533, Percent_Identity=31.3320825515947, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17559834, Length=557, Percent_Identity=28.9048473967684, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI115535101, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=183, Percent_Identity=31.6939890710383, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=30.635838150289, Blast_Score=66, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=32.368896925859, Blast_Score=248, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6320874, Length=546, Percent_Identity=33.6996336996337, Blast_Score=226, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6325030, Length=404, Percent_Identity=27.7227722772277, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=205, Percent_Identity=33.6585365853659, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6323278, Length=200, Percent_Identity=31.5, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24666836, Length=505, Percent_Identity=34.0594059405941, Blast_Score=261, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=29.5412844036697, Blast_Score=221, Evalue=2e-57,
Organism=Drosophila melanogaster, GI24642252, Length=551, Percent_Identity=30.3085299455535, Blast_Score=220, Evalue=3e-57,
Organism=Drosophila melanogaster, GI18859989, Length=551, Percent_Identity=30.3085299455535, Blast_Score=220, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71988; Mature: 71988

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLKNLSKDFAGRPLFTGINWHLKKGERVGLVGENGAGKSTLMKIVAGLVEHSAGEMIF
CCCCCCCCHHHCCCCEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
AKGATVGYLPQDGIVTRGRPLLAEVMTALDDLQRMERELADLTRRLEEIPHDDPEHGALL
ECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
DRYGHLQEEFRLRGGYAMEAEACRVLDGLGFLPADRGRDCGEFSGGWQMRIALAKLLLKK
HHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PNVLLLDEPTNHLDIEARNWLEGYLCEYPHSVILVSHDRFFMDQVCHRITEVWNSVLTDY
CCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HCSYSRYLVQREERVAALREAKRRQDEEVQKIEDFISRFRYKADKASLVQSRIKQLEKIE
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RIVLPPERKKIRFRFPDPPASGRIAMELAGVVKAYGPNVVLNGVDLTVEKGERIALVGHN
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECEEEEEECCCEEEEEECC
GAGKSTLMGIMAGKPFEGGERIVGHNVALDYFAQDQAQVLDSDKSVHDELLADAPFAMVP
CCCHHHHHHHHCCCCCCCCCEEECCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
QLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLFSKDV
HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LLDALKTFPGTVVFVSHDRYFIDGLATRVVEVAGGQLTSYHGDYEYYLQKKAAVDGQISP
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCC
VPGPRSPVPDSVPESKEERLRQREEEKSRQRDEKRRQKRLEELETAIAAEEERLAELEAR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MADPAFFQDLEAARQGGEEHAALTARIAGLYEEWETVGAEG
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLHLKNLSKDFAGRPLFTGINWHLKKGERVGLVGENGAGKSTLMKIVAGLVEHSAGEMIF
CCCCCCCCHHHCCCCEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
AKGATVGYLPQDGIVTRGRPLLAEVMTALDDLQRMERELADLTRRLEEIPHDDPEHGALL
ECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
DRYGHLQEEFRLRGGYAMEAEACRVLDGLGFLPADRGRDCGEFSGGWQMRIALAKLLLKK
HHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PNVLLLDEPTNHLDIEARNWLEGYLCEYPHSVILVSHDRFFMDQVCHRITEVWNSVLTDY
CCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HCSYSRYLVQREERVAALREAKRRQDEEVQKIEDFISRFRYKADKASLVQSRIKQLEKIE
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RIVLPPERKKIRFRFPDPPASGRIAMELAGVVKAYGPNVVLNGVDLTVEKGERIALVGHN
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECEEEEEECCCEEEEEECC
GAGKSTLMGIMAGKPFEGGERIVGHNVALDYFAQDQAQVLDSDKSVHDELLADAPFAMVP
CCCHHHHHHHHCCCCCCCCCEEECCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
QLRDILGAFLFSGDDIHKKVAVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLFSKDV
HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
LLDALKTFPGTVVFVSHDRYFIDGLATRVVEVAGGQLTSYHGDYEYYLQKKAAVDGQISP
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCC
VPGPRSPVPDSVPESKEERLRQREEEKSRQRDEKRRQKRLEELETAIAAEEERLAELEAR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MADPAFFQDLEAARQGGEEHAALTARIAGLYEEWETVGAEG
HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]