Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78223663

GI number: 78223663

Start: 2784467

End: 2786287

Strand: Direct

Name: bphB [H]

Synonym: Gmet_2460

Alternate gene names: 78223663

Gene position: 2784467-2786287 (Clockwise)

Preceding gene: 78223661

Following gene: 78223667

Centisome position: 69.66

GC content: 59.75

Gene sequence:

>1821_bases
ATGGCCCCGAAAGAGAGCCCAGCAACGAAGTCGCCGGGGAAAGTGCCGAATCTGCAAAGGTTCGCCCATTGGCTCCCGCT
GGCGGTTCTGACGGTCGGCCTGCTCCTTACCTACGAACTGTGGAAGCATGAACATCAGATCGTTGCCCGGGATCTCCGGG
CGAATTTCGATTTTCTCGTGCAGGAAGATCTCACCCTCATAAAACAGCGCATGCAGGCGTACGAGCAGGTGCTGCGCGGG
ACGCGGGGATTGTTCACCGCTTCCGAGTCGGTGGAACGCCATGAGTTTCGCGACTACGTGACGGCTCTCGGCCTGGAAGA
GTCCTACCGCGGCATCCAGGGGGTGGGTTTTACGCAGATCGTACCGGCAGCGCGACTGCAGTCACATATCGAGTCCGTCA
GGAAGGAAGGATTCCCCGATTACGCCATCTGGCCGGACAGGGAACAGGAGATCCATACCTCTATCATTTACCTGGAGCCG
TTCTCGGGCCGCAATCTGCGTGCCTTCGGTTACGACATGTTTTCCGAGCAGGTGCGGCATGCCGCCATGGTACGGGCGCG
CGACACCGGCACAGTTGCCCTGTCCGGCAAGGTGAGGCTTGTGCAGGAGACCGGGGAGCGGGAACAGGCGGGGGTTCTCA
GTTATCTCCCTATTTATGCCAACGGCAAGCGCCTCGATTCCGTGCAGTCGCGCCGCTCGGCAATCATCGGGTGGGTTTAC
TCGCCATTTCGCATGGACGACCTCATGGCCGGACTTTTCGGTGGTCGCGCCAACGAAATCGATATCGAGATCTACGACGG
GGAGGAAATATCCGAAAAGACACTCTTGCACGACTCTGACAAGATCCGCTTCGCCGGGGTCATGGAGGCCCCGCTGCTCG
CCATCAAACGGATGGAAATAGCCGGCCGCATCTGGACCGTGGCGTTCCGCTCCCTACCCCCCTTTGAAAAGCGCCTGAAG
AGCAACCAGGCAGGATACGTGGCCGTCACGGGGATCGTGCTGAGCCTGCTCCTGACGGCGATCACCCGGCTTCTGGCACG
CGGACGGTCCCGTGCCATGGAAGCCAGGGAGGCACTGGCCATCAAGCAGAAGCAGCTTGAAGACCTGAATCTCTCCCTTG
AACAACGGGTTGCCGAACGCACCGCGGAACTGGAGCGCCTGAACCGGGAGCTGGAGAGCTTCTGCTACTCCATCTCCCAC
GAAATACAGGCGCCGATTGCCCGGCTGGATGGTTTCAGCACGGCAATTGCCGAGTCCGCCAGGGATGCCGGCTCTAACGA
GGTGCTCTATCTGGCGGAAAGGCTCGGGGTGGCAAGCCGGAAGTTGAGAGACGTCATTGACAGCCTGCTGGTTATCTATC
GCCTTGGGAGCACCGAGATGGAGATGGTGCCGGTGGATCTCTCTCAGCTTTGCGGCCAGATATTTGACGAACTGCGGGAA
CATGAACGCACGATCAAGGTTACCATTGCCCCGGACGTGGTGGTGCAGGGTGATCACCGGATGCTTGAAACCTGCATTCG
GCACCTTCTGGAGAATGCAGTGAAATACAGCGCCAGGAATCCGGAAGCGGCAGTCGAGTTCGGGGAAATAATACAGACGG
GGGAAGCGGTCTTTTTTGTAAGGGACAACGGTGTGGGGTTCGACATGGCATTTGCCGGCAAGCTCTTCGAGCCTTTCTGC
CGCCTCCATTGCGAGTCCGAGTTCGAGGGGAGCGGCACGGGCCTTCCTACCGTGCAGCGGATCATCGAACGGCACGGCGG
GAGAATCTGGGCCGAGGCCACCCCGGGAAATGGGGCAACGTTCTTCTTTACTCTCGGCTGA

Upstream 100 bases:

>100_bases
ACCGACACCCCTTGCCATCCGGACATCGGCTTCGTCCAACGCCTTTCCCGGATACTTTGGGGAACGAATCCCCGGGCGGT
TACCACCAGAGGATTAATTA

Downstream 100 bases:

>100_bases
CGCGAACCACCATACAAACAGAGGCCGTCACCCCTTCACGGATGACGGCCCCATTAATTCTGCGGCAGGCGGATTGCCGG
GCTTTCTAGCGGCTCTTCAC

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MAPKESPATKSPGKVPNLQRFAHWLPLAVLTVGLLLTYELWKHEHQIVARDLRANFDFLVQEDLTLIKQRMQAYEQVLRG
TRGLFTASESVERHEFRDYVTALGLEESYRGIQGVGFTQIVPAARLQSHIESVRKEGFPDYAIWPDREQEIHTSIIYLEP
FSGRNLRAFGYDMFSEQVRHAAMVRARDTGTVALSGKVRLVQETGEREQAGVLSYLPIYANGKRLDSVQSRRSAIIGWVY
SPFRMDDLMAGLFGGRANEIDIEIYDGEEISEKTLLHDSDKIRFAGVMEAPLLAIKRMEIAGRIWTVAFRSLPPFEKRLK
SNQAGYVAVTGIVLSLLLTAITRLLARGRSRAMEAREALAIKQKQLEDLNLSLEQRVAERTAELERLNRELESFCYSISH
EIQAPIARLDGFSTAIAESARDAGSNEVLYLAERLGVASRKLRDVIDSLLVIYRLGSTEMEMVPVDLSQLCGQIFDELRE
HERTIKVTIAPDVVVQGDHRMLETCIRHLLENAVKYSARNPEAAVEFGEIIQTGEAVFFVRDNGVGFDMAFAGKLFEPFC
RLHCESEFEGSGTGLPTVQRIIERHGGRIWAEATPGNGATFFFTLG

Sequences:

>Translated_606_residues
MAPKESPATKSPGKVPNLQRFAHWLPLAVLTVGLLLTYELWKHEHQIVARDLRANFDFLVQEDLTLIKQRMQAYEQVLRG
TRGLFTASESVERHEFRDYVTALGLEESYRGIQGVGFTQIVPAARLQSHIESVRKEGFPDYAIWPDREQEIHTSIIYLEP
FSGRNLRAFGYDMFSEQVRHAAMVRARDTGTVALSGKVRLVQETGEREQAGVLSYLPIYANGKRLDSVQSRRSAIIGWVY
SPFRMDDLMAGLFGGRANEIDIEIYDGEEISEKTLLHDSDKIRFAGVMEAPLLAIKRMEIAGRIWTVAFRSLPPFEKRLK
SNQAGYVAVTGIVLSLLLTAITRLLARGRSRAMEAREALAIKQKQLEDLNLSLEQRVAERTAELERLNRELESFCYSISH
EIQAPIARLDGFSTAIAESARDAGSNEVLYLAERLGVASRKLRDVIDSLLVIYRLGSTEMEMVPVDLSQLCGQIFDELRE
HERTIKVTIAPDVVVQGDHRMLETCIRHLLENAVKYSARNPEAAVEFGEIIQTGEAVFFVRDNGVGFDMAFAGKLFEPFC
RLHCESEFEGSGTGLPTVQRIIERHGGRIWAEATPGNGATFFFTLG
>Mature_605_residues
APKESPATKSPGKVPNLQRFAHWLPLAVLTVGLLLTYELWKHEHQIVARDLRANFDFLVQEDLTLIKQRMQAYEQVLRGT
RGLFTASESVERHEFRDYVTALGLEESYRGIQGVGFTQIVPAARLQSHIESVRKEGFPDYAIWPDREQEIHTSIIYLEPF
SGRNLRAFGYDMFSEQVRHAAMVRARDTGTVALSGKVRLVQETGEREQAGVLSYLPIYANGKRLDSVQSRRSAIIGWVYS
PFRMDDLMAGLFGGRANEIDIEIYDGEEISEKTLLHDSDKIRFAGVMEAPLLAIKRMEIAGRIWTVAFRSLPPFEKRLKS
NQAGYVAVTGIVLSLLLTAITRLLARGRSRAMEAREALAIKQKQLEDLNLSLEQRVAERTAELERLNRELESFCYSISHE
IQAPIARLDGFSTAIAESARDAGSNEVLYLAERLGVASRKLRDVIDSLLVIYRLGSTEMEMVPVDLSQLCGQIFDELREH
ERTIKVTIAPDVVVQGDHRMLETCIRHLLENAVKYSARNPEAAVEFGEIIQTGEAVFFVRDNGVGFDMAFAGKLFEPFCR
LHCESEFEGSGTGLPTVQRIIERHGGRIWAEATPGNGATFFFTLG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788393, Length=235, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789808, Length=192, Percent_Identity=26.0416666666667, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1789149, Length=260, Percent_Identity=23.4615384615385, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790346, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788549, Length=245, Percent_Identity=23.6734693877551, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790551, Length=264, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=25.7918552036199, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786600, Length=236, Percent_Identity=23.3050847457627, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786912, Length=247, Percent_Identity=26.7206477732794, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=22.7272727272727, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68197; Mature: 68066

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50839 CHASE ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKESPATKSPGKVPNLQRFAHWLPLAVLTVGLLLTYELWKHEHQIVARDLRANFDFLV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QEDLTLIKQRMQAYEQVLRGTRGLFTASESVERHEFRDYVTALGLEESYRGIQGVGFTQI
HHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHH
VPAARLQSHIESVRKEGFPDYAIWPDREQEIHTSIIYLEPFSGRNLRAFGYDMFSEQVRH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHH
AAMVRARDTGTVALSGKVRLVQETGEREQAGVLSYLPIYANGKRLDSVQSRRSAIIGWVY
HHHHHCCCCCEEEECCCEEEEECCCCHHHCCHHEEECEEECCCHHHHHHHHHHHEEHHHC
SPFRMDDLMAGLFGGRANEIDIEIYDGEEISEKTLLHDSDKIRFAGVMEAPLLAIKRMEI
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHH
AGRIWTVAFRSLPPFEKRLKSNQAGYVAVTGIVLSLLLTAITRLLARGRSRAMEAREALA
HHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKQKQLEDLNLSLEQRVAERTAELERLNRELESFCYSISHEIQAPIARLDGFSTAIAESA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RDAGSNEVLYLAERLGVASRKLRDVIDSLLVIYRLGSTEMEMVPVDLSQLCGQIFDELRE
HCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
HERTIKVTIAPDVVVQGDHRMLETCIRHLLENAVKYSARNPEAAVEFGEIIQTGEAVFFV
CCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
RDNGVGFDMAFAGKLFEPFCRLHCESEFEGSGTGLPTVQRIIERHGGRIWAEATPGNGAT
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCE
FFFTLG
EEEECC
>Mature Secondary Structure 
APKESPATKSPGKVPNLQRFAHWLPLAVLTVGLLLTYELWKHEHQIVARDLRANFDFLV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QEDLTLIKQRMQAYEQVLRGTRGLFTASESVERHEFRDYVTALGLEESYRGIQGVGFTQI
HHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHH
VPAARLQSHIESVRKEGFPDYAIWPDREQEIHTSIIYLEPFSGRNLRAFGYDMFSEQVRH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHH
AAMVRARDTGTVALSGKVRLVQETGEREQAGVLSYLPIYANGKRLDSVQSRRSAIIGWVY
HHHHHCCCCCEEEECCCEEEEECCCCHHHCCHHEEECEEECCCHHHHHHHHHHHEEHHHC
SPFRMDDLMAGLFGGRANEIDIEIYDGEEISEKTLLHDSDKIRFAGVMEAPLLAIKRMEI
CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHH
AGRIWTVAFRSLPPFEKRLKSNQAGYVAVTGIVLSLLLTAITRLLARGRSRAMEAREALA
HHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKQKQLEDLNLSLEQRVAERTAELERLNRELESFCYSISHEIQAPIARLDGFSTAIAESA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RDAGSNEVLYLAERLGVASRKLRDVIDSLLVIYRLGSTEMEMVPVDLSQLCGQIFDELRE
HCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
HERTIKVTIAPDVVVQGDHRMLETCIRHLLENAVKYSARNPEAAVEFGEIIQTGEAVFFV
CCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
RDNGVGFDMAFAGKLFEPFCRLHCESEFEGSGTGLPTVQRIIERHGGRIWAEATPGNGAT
ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCE
FFFTLG
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]