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The map label for this gene is ydjX [C]

Identifier: 78223659

GI number: 78223659

Start: 2779523

End: 2780197

Strand: Direct

Name: ydjX [C]

Synonym: Gmet_2456

Alternate gene names: 78223659

Gene position: 2779523-2780197 (Clockwise)

Preceding gene: 78223640

Following gene: 78223660

Centisome position: 69.53

GC content: 63.26

Gene sequence:

>675_bases
ATGACCAGACCGAAGCTTGTCGCAATCGCCGTCATCGGGCTTGCCGTGGCGCTTTTCTTCATGTCGGGGCTCGACAGGCA
CCTGACCCTTCAATCCCTCAAGGCGAACCGGGAACTTCTCGTATCCTATTCGGAGCAGCACCGTCTCGCCGCGGTCTCGC
TCTTTATCGGCATCTACGTGGTGCAGACCGCCCTCTCCCTCCCCGGCGCCGCGATCCTCTCCCTTGCGGCCGGCGCCATC
TTCGGCGCAGTACAAGGCACGGTCTACGCGGTGATCGGCGCCACCCTCGGCGCCACGCTCGCCTTCCTCGTGACCCGCTA
CCTTTTCCACGATGCGGTCCAGGAGAAGTTCGGCCATCGCCTCACAACCATAAACCGGGAGCTGGAAACGGCCGGGCTCA
ACTATCTCCTCTTCCTGCGGCTCGTCCCCCTCTTTCCCTTTTTCCTCATCAACCTTGCGGCCGGGCTTACCCACCTGCCG
TTGCGCACCTTTATCATCGGCACCCTGGTGGGCATCATTCCCGGCGGCTTCGTCTACGTGAACGCCGGGGCGAGCCTCGC
CACCATCTCGAATCCGGCCGACGCCGCCTCACCGCGGGTGCTCGGCTCCTTTGCCCTGCTGGGGCTCTTTGCCCTGATCC
CGGTCATCTACAGAAAGTTCACACGGAGAGCATGA

Upstream 100 bases:

>100_bases
ACTCACACTTCTTCCCGCGGATTGCCGGGACCGCCGCGGCTCCCCCCGTTCGTCGAGAAAGTACTCGACACCCGCATCGG
GTGGCAGTTATAACCTTTCC

Downstream 100 bases:

>100_bases
ATGGTTGCGGTATTCAAGGAACGGCTGCGCGAAATCGACCCCATGTACGTCACCTTCGAGGGGCTCCAGACCCTCCAGGT
GAACCTGGGGAACATCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTRPKLVAIAVIGLAVALFFMSGLDRHLTLQSLKANRELLVSYSEQHRLAAVSLFIGIYVVQTALSLPGAAILSLAAGAI
FGAVQGTVYAVIGATLGATLAFLVTRYLFHDAVQEKFGHRLTTINRELETAGLNYLLFLRLVPLFPFFLINLAAGLTHLP
LRTFIIGTLVGIIPGGFVYVNAGASLATISNPADAASPRVLGSFALLGLFALIPVIYRKFTRRA

Sequences:

>Translated_224_residues
MTRPKLVAIAVIGLAVALFFMSGLDRHLTLQSLKANRELLVSYSEQHRLAAVSLFIGIYVVQTALSLPGAAILSLAAGAI
FGAVQGTVYAVIGATLGATLAFLVTRYLFHDAVQEKFGHRLTTINRELETAGLNYLLFLRLVPLFPFFLINLAAGLTHLP
LRTFIIGTLVGIIPGGFVYVNAGASLATISNPADAASPRVLGSFALLGLFALIPVIYRKFTRRA
>Mature_223_residues
TRPKLVAIAVIGLAVALFFMSGLDRHLTLQSLKANRELLVSYSEQHRLAAVSLFIGIYVVQTALSLPGAAILSLAAGAIF
GAVQGTVYAVIGATLGATLAFLVTRYLFHDAVQEKFGHRLTTINRELETAGLNYLLFLRLVPLFPFFLINLAAGLTHLPL
RTFIIGTLVGIIPGGFVYVNAGASLATISNPADAASPRVLGSFALLGLFALIPVIYRKFTRRA

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI18087813, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI66392190, Length=194, Percent_Identity=25.2577319587629, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI87081964, Length=138, Percent_Identity=34.0579710144928, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788049, Length=139, Percent_Identity=33.0935251798561, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533280, Length=186, Percent_Identity=29.5698924731183, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17532687, Length=197, Percent_Identity=27.4111675126904, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115533785, Length=181, Percent_Identity=29.8342541436464, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18859941, Length=200, Percent_Identity=26, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23967; Mature: 23836

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPKLVAIAVIGLAVALFFMSGLDRHLTLQSLKANRELLVSYSEQHRLAAVSLFIGIYV
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VQTALSLPGAAILSLAAGAIFGAVQGTVYAVIGATLGATLAFLVTRYLFHDAVQEKFGHR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTTINRELETAGLNYLLFLRLVPLFPFFLINLAAGLTHLPLRTFIIGTLVGIIPGGFVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NAGASLATISNPADAASPRVLGSFALLGLFALIPVIYRKFTRRA
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRPKLVAIAVIGLAVALFFMSGLDRHLTLQSLKANRELLVSYSEQHRLAAVSLFIGIYV
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VQTALSLPGAAILSLAAGAIFGAVQGTVYAVIGATLGATLAFLVTRYLFHDAVQEKFGHR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTTINRELETAGLNYLLFLRLVPLFPFFLINLAAGLTHLPLRTFIIGTLVGIIPGGFVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NAGASLATISNPADAASPRVLGSFALLGLFALIPVIYRKFTRRA
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]