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The map label for this gene is tsr [C]

Identifier: 78223626

GI number: 78223626

Start: 2738791

End: 2741013

Strand: Reverse

Name: tsr [C]

Synonym: Gmet_2423

Alternate gene names: 78223626

Gene position: 2741013-2738791 (Counterclockwise)

Preceding gene: 78223627

Following gene: 78223625

Centisome position: 68.57

GC content: 57.71

Gene sequence:

>2223_bases
GTGTTGAAGAATCAGAAAATCGGTATCAAGTTGGCAATTGGCTTCGGTTTGTTGACGCTGTTTCTTTTGGTTGTCGGGGG
GACGGGCCTTTGGTCCACGAGGCAACTCAAGGCCACGATGGATGATGCCATAAAGGTGGATGCCGATATGGTCATTTCCG
GTCAGCGTGCCCGTGCCAACGTCAATATGCTGCGCCGCTACGAAAAGGACCTGTACATCAATATTGGCAACGTCCAGAAA
ACGGAGGAATACCGAAAGAAGTGGGATGAAACATTTGAGCACATAATGGCACGCGTCGATGCTATCGAAAAGGGGCTGTC
AAAGACTGACTATGATTCAACAAAGGAAAAGGAAGTTGTGGCCGGGCTCAAAAAAGACCTGCTCGGCTATGCCAATGGCT
TCAAAAAGGTGCATGAGAAGATCAAGGCGGGCGAGATCAAGACGACCACCGATGCCAATAAGGCCATCGGCGACGTGAAG
GATGAGGCCCACCGCTTCGAGGCCGGCGTCAATGATTTTGCAAAGGGCTCCGAAAAGCGGATGGAAGAGATGGTCAAAGA
GGCCAATGCGCTTGCCGGCAAGGCACAGATGCTCCTTATATCCGTGAGTGCCATATCCATTGTTCTGGCAATAATTCTGG
CATTCATTCTGACCCGCAGCATTACGCTGCCGCTGCAGAAGGCGGTGGCGGTGTCCAATGCCCTCGCCGTGGGAGACCTT
TCGGTTGCTATCGACGTGGACCGTACCGACGAAACCGGCCAGCTCCTCTCCTCCATGAAGAACATGGTGGAAAGCATGCG
GGTCCTGGCCAACGCCGCCGAGAAGGTGGCCGGAGGCGATCTGTCGGTCAAGGTGGTGGAAGTCCGTTCCGAGCAGGACA
TCCTTGCCCGCAACCTTGGCCGAATGCTGGCCACCCTCAACAACCTTCAAAGGGAGACAGAACACCTTGTTACATCTGTT
CAGGACGGCAAACTGGACCAACGGGGGGACGCCACATCATTCGACGGCGGGTGGCGCGATCTGGTGGCCGGAATCAACCG
GCTCATCGAGGCCTTTGTCGCTCCAATCCACATGACGGCCGTCTCCCTCGACCGCATCAGCCGTGGGGATATCCCCGAGC
GGATCAGCGAGGAGTACAAGGGTGATTTCAATGAGATAAAGAAAAACCTGAACAGCCTCATCGATTCCATGAACGCCGTA
ACGAAGCTGGCCCAGGAGATTGCCGGCGGTAATCTGATGGTTGAGGTTCGGGAACGCTCCGCACAGGATGAGCTGATGCG
TGCATTGGCCTCCATGGTGGCCCGGCTGCGCGACGTGGTGAGAGACATTGTCTCGGCTGCCGATAATGTTGGGTCGGGGA
GCCAGCAGCTCTCCTCCACGTCCGAGGAGATGAGCCAGGGGGCCACCGAGCAAGCTGCAGCTGCCGAAGAGGCTTCCAGC
AGCATGGAGCAGATGGCTGCGAACATCCGTCAGAACGCCGACAACGCCACCCAGACCGAGCGGATTGCCACGAAGTCCGC
TGCCGATGCCATCGAGGGGGGAAAGGCTGTAGGCAACACAGTGCAAGCCATGAAAGATATCGCCGGCAAGATATCCATCA
TCGAGGAGATTGCCCGGCAAACGAACCTGCTGGCGCTCAACGCGGCTATCGAGGCGGCGCGCGCAGGTGAGCACGGCAAG
GGTTTCGCGGTGGTCGCCTCGGAGGTGCGCAAGCTGGCCGAGCGGAGTCAGCGGGCTGCCGGCGAAATCAGTGAGCTCTC
CTCATCCAGTGTCGAGGTGGCGGTCAGGGCCGGGGAACTGCTGGCAACCATCGTTCCCGACATCCAGCGAACGGCGGAAC
TGGTGCAGGAGATCAGCGCGGCCTGCCGTGAGCAGGACACCGGGGCCGAGCAGATCAATAAGGCGATTCAGCAGCTCGAT
ACCGTTATTCAGCAGAACGCCTCGGCCAGCGAAGAAATGTCCTCTACCTCAGAGGAGCTGGCCAGCCAGGCGGAACAACT
CCAGACAACCATTGGCTTTTTCCGGATTGGTGACGAGGAACGAAGGAGACCCGAAGCCAGGCTGACGAGGGCCGCAAAAC
GGATCCATGTCGGGCATATGGACGCCGGCAATGCTGCGCTCCCTGCCAAAAACCGCGGGGATCAGCCTCCCTTGGCGGTT
GGTGGAATTTCATATGATATGGGTAGTGGTGACTCCATGGACACCGAATTCGAAAAGTTCTGA

Upstream 100 bases:

>100_bases
AAGTTTTTCCACTGGACGCCGATATATTCCTTAGAGTCAATACATTCCACAAGAGTGTGAGGTGTGGATACACCGCTTCA
TGAGTAAAGAGAGGTGCCCC

Downstream 100 bases:

>100_bases
TCGCGGCTGCGTCATACAAGCGCAATGCAGCCCCTCCTGTGGCATTCGGGAGGGGCTGTTATTTAGAGATGGAGAGAAGA
GAGAAAATTATTAGTGATTC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MLKNQKIGIKLAIGFGLLTLFLLVVGGTGLWSTRQLKATMDDAIKVDADMVISGQRARANVNMLRRYEKDLYINIGNVQK
TEEYRKKWDETFEHIMARVDAIEKGLSKTDYDSTKEKEVVAGLKKDLLGYANGFKKVHEKIKAGEIKTTTDANKAIGDVK
DEAHRFEAGVNDFAKGSEKRMEEMVKEANALAGKAQMLLISVSAISIVLAIILAFILTRSITLPLQKAVAVSNALAVGDL
SVAIDVDRTDETGQLLSSMKNMVESMRVLANAAEKVAGGDLSVKVVEVRSEQDILARNLGRMLATLNNLQRETEHLVTSV
QDGKLDQRGDATSFDGGWRDLVAGINRLIEAFVAPIHMTAVSLDRISRGDIPERISEEYKGDFNEIKKNLNSLIDSMNAV
TKLAQEIAGGNLMVEVRERSAQDELMRALASMVARLRDVVRDIVSAADNVGSGSQQLSSTSEEMSQGATEQAAAAEEASS
SMEQMAANIRQNADNATQTERIATKSAADAIEGGKAVGNTVQAMKDIAGKISIIEEIARQTNLLALNAAIEAARAGEHGK
GFAVVASEVRKLAERSQRAAGEISELSSSSVEVAVRAGELLATIVPDIQRTAELVQEISAACREQDTGAEQINKAIQQLD
TVIQQNASASEEMSSTSEELASQAEQLQTTIGFFRIGDEERRRPEARLTRAAKRIHVGHMDAGNAALPAKNRGDQPPLAV
GGISYDMGSGDSMDTEFEKF

Sequences:

>Translated_740_residues
MLKNQKIGIKLAIGFGLLTLFLLVVGGTGLWSTRQLKATMDDAIKVDADMVISGQRARANVNMLRRYEKDLYINIGNVQK
TEEYRKKWDETFEHIMARVDAIEKGLSKTDYDSTKEKEVVAGLKKDLLGYANGFKKVHEKIKAGEIKTTTDANKAIGDVK
DEAHRFEAGVNDFAKGSEKRMEEMVKEANALAGKAQMLLISVSAISIVLAIILAFILTRSITLPLQKAVAVSNALAVGDL
SVAIDVDRTDETGQLLSSMKNMVESMRVLANAAEKVAGGDLSVKVVEVRSEQDILARNLGRMLATLNNLQRETEHLVTSV
QDGKLDQRGDATSFDGGWRDLVAGINRLIEAFVAPIHMTAVSLDRISRGDIPERISEEYKGDFNEIKKNLNSLIDSMNAV
TKLAQEIAGGNLMVEVRERSAQDELMRALASMVARLRDVVRDIVSAADNVGSGSQQLSSTSEEMSQGATEQAAAAEEASS
SMEQMAANIRQNADNATQTERIATKSAADAIEGGKAVGNTVQAMKDIAGKISIIEEIARQTNLLALNAAIEAARAGEHGK
GFAVVASEVRKLAERSQRAAGEISELSSSSVEVAVRAGELLATIVPDIQRTAELVQEISAACREQDTGAEQINKAIQQLD
TVIQQNASASEEMSSTSEELASQAEQLQTTIGFFRIGDEERRRPEARLTRAAKRIHVGHMDAGNAALPAKNRGDQPPLAV
GGISYDMGSGDSMDTEFEKF
>Mature_740_residues
MLKNQKIGIKLAIGFGLLTLFLLVVGGTGLWSTRQLKATMDDAIKVDADMVISGQRARANVNMLRRYEKDLYINIGNVQK
TEEYRKKWDETFEHIMARVDAIEKGLSKTDYDSTKEKEVVAGLKKDLLGYANGFKKVHEKIKAGEIKTTTDANKAIGDVK
DEAHRFEAGVNDFAKGSEKRMEEMVKEANALAGKAQMLLISVSAISIVLAIILAFILTRSITLPLQKAVAVSNALAVGDL
SVAIDVDRTDETGQLLSSMKNMVESMRVLANAAEKVAGGDLSVKVVEVRSEQDILARNLGRMLATLNNLQRETEHLVTSV
QDGKLDQRGDATSFDGGWRDLVAGINRLIEAFVAPIHMTAVSLDRISRGDIPERISEEYKGDFNEIKKNLNSLIDSMNAV
TKLAQEIAGGNLMVEVRERSAQDELMRALASMVARLRDVVRDIVSAADNVGSGSQQLSSTSEEMSQGATEQAAAAEEASS
SMEQMAANIRQNADNATQTERIATKSAADAIEGGKAVGNTVQAMKDIAGKISIIEEIARQTNLLALNAAIEAARAGEHGK
GFAVVASEVRKLAERSQRAAGEISELSSSSVEVAVRAGELLATIVPDIQRTAELVQEISAACREQDTGAEQINKAIQQLD
TVIQQNASASEEMSSTSEELASQAEQLQTTIGFFRIGDEERRRPEARLTRAAKRIHVGHMDAGNAALPAKNRGDQPPLAV
GGISYDMGSGDSMDTEFEKF

Specific function: May bind attractants or detect changes in the extracellular concentration of soluble sugars [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=306, Percent_Identity=40.1960784313725, Blast_Score=181, Evalue=2e-46,
Organism=Escherichia coli, GI1787690, Length=289, Percent_Identity=41.1764705882353, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI1788195, Length=320, Percent_Identity=37.5, Blast_Score=173, Evalue=4e-44,
Organism=Escherichia coli, GI1788194, Length=296, Percent_Identity=39.1891891891892, Blast_Score=169, Evalue=8e-43,
Organism=Escherichia coli, GI1789453, Length=273, Percent_Identity=35.5311355311355, Blast_Score=143, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 80005; Mature: 80005

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNQKIGIKLAIGFGLLTLFLLVVGGTGLWSTRQLKATMDDAIKVDADMVISGQRARAN
CCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEECCCHHHHH
VNMLRRYEKDLYINIGNVQKTEEYRKKWDETFEHIMARVDAIEKGLSKTDYDSTKEKEVV
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
AGLKKDLLGYANGFKKVHEKIKAGEIKTTTDANKAIGDVKDEAHRFEAGVNDFAKGSEKR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCHHHH
MEEMVKEANALAGKAQMLLISVSAISIVLAIILAFILTRSITLPLQKAVAVSNALAVGDL
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCE
SVAIDVDRTDETGQLLSSMKNMVESMRVLANAAEKVAGGDLSVKVVEVRSEQDILARNLG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH
RMLATLNNLQRETEHLVTSVQDGKLDQRGDATSFDGGWRDLVAGINRLIEAFVAPIHMTA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLDRISRGDIPERISEEYKGDFNEIKKNLNSLIDSMNAVTKLAQEIAGGNLMVEVRERS
HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHC
AQDELMRALASMVARLRDVVRDIVSAADNVGSGSQQLSSTSEEMSQGATEQAAAAEEASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SMEQMAANIRQNADNATQTERIATKSAADAIEGGKAVGNTVQAMKDIAGKISIIEEIARQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQRAAGEISELSSSSVEVAVRAGEL
HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LATIVPDIQRTAELVQEISAACREQDTGAEQINKAIQQLDTVIQQNASASEEMSSTSEEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ASQAEQLQTTIGFFRIGDEERRRPEARLTRAAKRIHVGHMDAGNAALPAKNRGDQPPLAV
HHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
GGISYDMGSGDSMDTEFEKF
CCCEECCCCCCCCCCHHHCC
>Mature Secondary Structure
MLKNQKIGIKLAIGFGLLTLFLLVVGGTGLWSTRQLKATMDDAIKVDADMVISGQRARAN
CCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEECCCHHHHH
VNMLRRYEKDLYINIGNVQKTEEYRKKWDETFEHIMARVDAIEKGLSKTDYDSTKEKEVV
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
AGLKKDLLGYANGFKKVHEKIKAGEIKTTTDANKAIGDVKDEAHRFEAGVNDFAKGSEKR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCHHHH
MEEMVKEANALAGKAQMLLISVSAISIVLAIILAFILTRSITLPLQKAVAVSNALAVGDL
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCE
SVAIDVDRTDETGQLLSSMKNMVESMRVLANAAEKVAGGDLSVKVVEVRSEQDILARNLG
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH
RMLATLNNLQRETEHLVTSVQDGKLDQRGDATSFDGGWRDLVAGINRLIEAFVAPIHMTA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLDRISRGDIPERISEEYKGDFNEIKKNLNSLIDSMNAVTKLAQEIAGGNLMVEVRERS
HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHC
AQDELMRALASMVARLRDVVRDIVSAADNVGSGSQQLSSTSEEMSQGATEQAAAAEEASS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SMEQMAANIRQNADNATQTERIATKSAADAIEGGKAVGNTVQAMKDIAGKISIIEEIARQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQRAAGEISELSSSSVEVAVRAGEL
HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LATIVPDIQRTAELVQEISAACREQDTGAEQINKAIQQLDTVIQQNASASEEMSSTSEEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ASQAEQLQTTIGFFRIGDEERRRPEARLTRAAKRIHVGHMDAGNAALPAKNRGDQPPLAV
HHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
GGISYDMGSGDSMDTEFEKF
CCCEECCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8436949 [H]