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The map label for this gene is yhjL [C]

Identifier: 78223606

GI number: 78223606

Start: 2716531

End: 2717334

Strand: Reverse

Name: yhjL [C]

Synonym: Gmet_2403

Alternate gene names: 78223606

Gene position: 2717334-2716531 (Counterclockwise)

Preceding gene: 78223608

Following gene: 78223605

Centisome position: 67.98

GC content: 60.57

Gene sequence:

>804_bases
ATGGCGGATACGTTCGACGAACTTCTGGCAAAGGGGATCAGTCTCGCTGAGGCGGGCGACTACACGGGTGCCGCCGCGCA
GTTCAGGGAGTGCGTGGAGCGCGAACCCGATAATGCCGAAGGGTACTTTTACCTTGGAGAAGCATTGAGCGAGGAGGGGA
AGCTCCAGGACGCCCTCAAGGAATACGAGAAGGGGCTGAAGCTTGCTCCCGATGACCTCGACGCCCTCACCGCTGTGGGA
GACATCAAGTTCGAGCTGGGGCAGTACAAGGAGGCCCTGGCGGCCTACCAGCGGGTGGTGGCGCTCGACCCTGACAACTC
CGATGCCCATGTGAACATCGGCCTTGTTTACAATAGCCTGGAGCGGACCCAGAAGGCGATCAAGGCCTTCGAGAAGGCCC
TTGAGATAGACCCGGCCAACGTCTTTGCCTACAACGGCCTTGGCGATGCCTGGTATGGCCTCGACGAGCACGAGAAAGCC
ATCGCCGCCTTCCAGAAGGGGATCGAACTGGACCCGGACGACGCCGCGGCCCACTTCAACCTGGGTGAGCTTTACTATGA
CCTTGGCGAGCACGATGAGGCCGAGCATGAGTGCCTGGAGGCCGTGCGGCTCGACCCCGCCTTCAGCATGTCGTATCTCA
CCCTTGGCAGCCTCTATATGGATAACGAGCGGGTCAAGGACGCCATCAGGTACCTGGAACTCTATCTCAGGCACGAGAAG
TCTCCCCAGGCCAAGGAAACCGTTGCCGAGGTGCAGGCAGTGCTCGAAGGACTCAGGGCGGAAGTGGACTCGACTAATGG
CTGA

Upstream 100 bases:

>100_bases
GGAGTTGGGAAAATCATCCTTCTGTGACTGCGGCGGTGGCGCCGCCCGTATTCCTCTGGTATAGTGTGCCCCAAGAATAC
CGGGAAAAAGGAGAGGGACC

Downstream 100 bases:

>100_bases
AGTGCGGTACCATTGTCTCTAACGAAGATTATTTCCCGGAAGGAGGGATGATCCATGTCCGAAGACAAGAACAACACGCT
GATGGTTGGCTCGCTGATGC

Product: tetratricopeptide TPR_4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MADTFDELLAKGISLAEAGDYTGAAAQFRECVEREPDNAEGYFYLGEALSEEGKLQDALKEYEKGLKLAPDDLDALTAVG
DIKFELGQYKEALAAYQRVVALDPDNSDAHVNIGLVYNSLERTQKAIKAFEKALEIDPANVFAYNGLGDAWYGLDEHEKA
IAAFQKGIELDPDDAAAHFNLGELYYDLGEHDEAEHECLEAVRLDPAFSMSYLTLGSLYMDNERVKDAIRYLELYLRHEK
SPQAKETVAEVQAVLEGLRAEVDSTNG

Sequences:

>Translated_267_residues
MADTFDELLAKGISLAEAGDYTGAAAQFRECVEREPDNAEGYFYLGEALSEEGKLQDALKEYEKGLKLAPDDLDALTAVG
DIKFELGQYKEALAAYQRVVALDPDNSDAHVNIGLVYNSLERTQKAIKAFEKALEIDPANVFAYNGLGDAWYGLDEHEKA
IAAFQKGIELDPDDAAAHFNLGELYYDLGEHDEAEHECLEAVRLDPAFSMSYLTLGSLYMDNERVKDAIRYLELYLRHEK
SPQAKETVAEVQAVLEGLRAEVDSTNG
>Mature_266_residues
ADTFDELLAKGISLAEAGDYTGAAAQFRECVEREPDNAEGYFYLGEALSEEGKLQDALKEYEKGLKLAPDDLDALTAVGD
IKFELGQYKEALAAYQRVVALDPDNSDAHVNIGLVYNSLERTQKAIKAFEKALEIDPANVFAYNGLGDAWYGLDEHEKAI
AAFQKGIELDPDDAAAHFNLGELYYDLGEHDEAEHECLEAVRLDPAFSMSYLTLGSLYMDNERVKDAIRYLELYLRHEKS
PQAKETVAEVQAVLEGLRAEVDSTNG

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=212, Percent_Identity=30.188679245283, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI32307148, Length=212, Percent_Identity=30.188679245283, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI301336134, Length=192, Percent_Identity=28.125, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI83415184, Length=192, Percent_Identity=28.125, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI118766330, Length=190, Percent_Identity=26.8421052631579, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI224809432, Length=210, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI118766328, Length=190, Percent_Identity=26.8421052631579, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI167466177, Length=219, Percent_Identity=22.3744292237443, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI167466175, Length=219, Percent_Identity=22.3744292237443, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI22749211, Length=225, Percent_Identity=26.2222222222222, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI196259772, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI196259776, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI196259774, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21361204, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI196259770, Length=210, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI310123097, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310110582, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310131789, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=222, Percent_Identity=25.6756756756757, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI115532692, Length=222, Percent_Identity=25.6756756756757, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI25147174, Length=203, Percent_Identity=24.1379310344828, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6319387, Length=209, Percent_Identity=27.7511961722488, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6319589, Length=229, Percent_Identity=26.6375545851528, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17647755, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24585827, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24585829, Length=217, Percent_Identity=30.4147465437788, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24656717, Length=193, Percent_Identity=27.4611398963731, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI18110006, Length=193, Percent_Identity=27.4611398963731, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24647123, Length=123, Percent_Identity=30.0813008130081, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24659892, Length=174, Percent_Identity=22.9885057471264, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19920486, Length=203, Percent_Identity=24.6305418719212, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161076610, Length=203, Percent_Identity=24.6305418719212, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21355911, Length=206, Percent_Identity=23.7864077669903, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 29558; Mature: 29427

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTFDELLAKGISLAEAGDYTGAAAQFRECVEREPDNAEGYFYLGEALSEEGKLQDALK
CCCCHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHCCCCHHHHHHH
EYEKGLKLAPDDLDALTAVGDIKFELGQYKEALAAYQRVVALDPDNSDAHVNIGLVYNSL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHH
ERTQKAIKAFEKALEIDPANVFAYNGLGDAWYGLDEHEKAIAAFQKGIELDPDDAAAHFN
HHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCC
LGELYYDLGEHDEAEHECLEAVRLDPAFSMSYLTLGSLYMDNERVKDAIRYLELYLRHEK
HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
SPQAKETVAEVQAVLEGLRAEVDSTNG
CCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADTFDELLAKGISLAEAGDYTGAAAQFRECVEREPDNAEGYFYLGEALSEEGKLQDALK
CCCHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHCCCCHHHHHHH
EYEKGLKLAPDDLDALTAVGDIKFELGQYKEALAAYQRVVALDPDNSDAHVNIGLVYNSL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHH
ERTQKAIKAFEKALEIDPANVFAYNGLGDAWYGLDEHEKAIAAFQKGIELDPDDAAAHFN
HHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCC
LGELYYDLGEHDEAEHECLEAVRLDPAFSMSYLTLGSLYMDNERVKDAIRYLELYLRHEK
HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
SPQAKETVAEVQAVLEGLRAEVDSTNG
CCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]