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The map label for this gene is omp85 [H]

Identifier: 78223560

GI number: 78223560

Start: 2663700

End: 2665958

Strand: Reverse

Name: omp85 [H]

Synonym: Gmet_2357

Alternate gene names: 78223560

Gene position: 2665958-2663700 (Counterclockwise)

Preceding gene: 78223561

Following gene: 78223559

Centisome position: 66.69

GC content: 57.55

Gene sequence:

>2259_bases
GTGATTCGGTTACATGCAACTAGAGTTGGTATCGCCGCGGCAGTCGTTCTCGCTGCCCAAGGGGCCTTTGCCGAAGGGGA
GAAAATCTCCGACGTTCAGGTGAGGGGCAACCGGAGAATCGACGCTGCGGCCATACTCAATGCCGTAACGCTTAAGGCGG
GCGACCTTTTCTACGTGGAGAAGGTTGACGCGGACATCCGTGCCATCTATCGGCTGGGGCAGTTTCAGGATGTGAAGGCC
GACACGGAGAAATCGGACGGCGGCGTTGTTCTCGTTTATACGGTCGTCGAGAAGCCGATCATTCGCGAGATCAAGATCGA
CGGGGCAAAGCAAATCTCCACCGATAAGGTGCGAGAGGCCCTCGGCCTGAAAACCAACACCATATTCTCGCAGAAAGAAC
TGACTCTGAGCGCCAAGAAGGTAAAGAAACTGTACGCCGACGAGGGGTATTACCTGGCCGAAGTCGATGTAAAGGGCGAG
AAACGTTCCGGCAACGACGTCAGAGTGGTCGTCGCCATCACCGAAGGGGAAAAGGTCCTCATCAAAGCGATCCGGTTCGA
GGGTAACAAGGCCTTCCCCGACAAGAAGCTCCGTGGCGTCATGGAGACCAAGGAGAAATGGTTTCTGTCCTGGCTCACCG
GCGCCGGAACCTATAAGGACGAAGTCCTCAAGAACGACGTGAATCTCATTGCCGACCTCTACTTCAACAACGGCTACGTG
AACGTGAAAGTTGGAGAGCCCGACGTCAAGGTCCTGGAGGATCGCAGCGGTCTTGCCGTTACCATCGGCATCACCGAAGG
GGATCAGTACAAGACCGGTTCCATCGGGTTCAAGGGAGACCTCCTGGAGAAGGAGGACGTGCTCGGCCTGGGGCTTCGGG
TCAAGACTGGCGAGACGTTCAACCGCGCGAACCTGCGAGCTGACGTGCTCGCTCTCACGGACCTCTATGCCGACAAGGGG
TACGCCTTCACCAACGTTACCCCCCTTTCCAAGATAAACGCCGACAAGAAGACCGTTGACATAACCTTTGATTTCGAGAA
GGGGGAAAAGGTTTTTATCGACCGGATAAATGTCATCGGCAACACCAAGACCCGCGACAAGGTCCTGCGTCGAGAGATCA
AGCTTGTCGAGGGGGATGCTTACAGCAGCACCGGACTCAAGAAGAGCAAGCAGAGTCTCATGAATCTCGGTTTCTTCGAG
GAAGTGAACATTGCCACCGCGAAAGGGAGTGCCGACAACAAGCTCGATGTGAACGTGGAGGTGAAGGAGAAGCCGACCGG
GACGTTCAGTATCGGCGCCGGCTATAGTTCCCTTGATGGTCTCATCGGCCAGGGCTCGGTTTCCCAGGGGAACTTCCTGG
GGCTCGGTCTCAAGGCGAACCTCGCCGCCTCCATCGGCGGCAAGTCCTCTACCTATAACGTGGGGCTCACGGACCCCTAT
TTCCTCGATACCCGCTGGACGGTGGGCGCTGACATTTACCGCACCGAGCGGGACTACCTCGACTTTACGCGGCGCGCCAC
GGGTGGCGACATCAAGGCGGGGTATCCGTTGAGCGACACCATGCGGACCCTCTGGATGTACAAGTACGAGGACAAGAAGA
TATTCGACGTCAATGTGTCGAGTGAGGATATAATCCCCGAAACCACGTCCACCACCAGCTCCATCACCGCGAGCCTCACC
CGTGACACCACCGACTACCGGCTCGACCCGACCACGGGGATGGTGAACAACATCTCCATCGAGGTCGCCGGTTTGGGGGG
CACCAGCCGCTTCATCCGCTACTTCGGTGATACATCATTGTTCTTCCCCATGAAGTGGAGCACGGTCCTCAGCCTCAGGG
GCGCACTTGGTTACATCCAGGGCATCGGCAAGGATGTTCCGATCGACGAACGTTTCTTCGCCGGCGGGATCAACACGATC
CGTGGCTACGAGGGGCGGAGCATCAGCCCCTACAAGAGAACTTCTACCGGCGAGGCGGCGTTCATCGGTGGGGACAAGGA
AGCCGTTTTCAACCTGGAATACACGTTCCCGCTTCTCAAGGATGCCGGGCTCAAGGGGGTCGCGTTCTTTGATGCCGGCA
ACGTCTATGACACGGGCGACACCATGTTCTCCAGTTTTCGCATGAGCTACGGCGCAGGTATCCGCTGGGTATCGCCGCTT
GGACCGCTGCGCCTCGAGTACGGCATCCCCATCAACCCCAGGGATGGCATCGACAAGACCAGTGGCAAGTTCGAGTTCTC
CATCGGAAGCTTCTTCTGA

Upstream 100 bases:

>100_bases
TTACATGGGGCGGACGGTCCGTCTGGTGGACGGCCGGGTCGTTGCCGATTAACGCAATCGGCGCATATACAGCTGTACAT
TCCATTCTCCCGGGGGAGAA

Downstream 100 bases:

>100_bases
CAGTACGGGCCGCTGGCCCATACGATTTGAATCGCAGTATTACGGCACGAAAGGAAGAAACAAATGAAAAGATTCGTTAC
GGTTGCATCCATCGTGGGTT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 752; Mature: 752

Protein sequence:

>752_residues
MIRLHATRVGIAAAVVLAAQGAFAEGEKISDVQVRGNRRIDAAAILNAVTLKAGDLFYVEKVDADIRAIYRLGQFQDVKA
DTEKSDGGVVLVYTVVEKPIIREIKIDGAKQISTDKVREALGLKTNTIFSQKELTLSAKKVKKLYADEGYYLAEVDVKGE
KRSGNDVRVVVAITEGEKVLIKAIRFEGNKAFPDKKLRGVMETKEKWFLSWLTGAGTYKDEVLKNDVNLIADLYFNNGYV
NVKVGEPDVKVLEDRSGLAVTIGITEGDQYKTGSIGFKGDLLEKEDVLGLGLRVKTGETFNRANLRADVLALTDLYADKG
YAFTNVTPLSKINADKKTVDITFDFEKGEKVFIDRINVIGNTKTRDKVLRREIKLVEGDAYSSTGLKKSKQSLMNLGFFE
EVNIATAKGSADNKLDVNVEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLKANLAASIGGKSSTYNVGLTDPY
FLDTRWTVGADIYRTERDYLDFTRRATGGDIKAGYPLSDTMRTLWMYKYEDKKIFDVNVSSEDIIPETTSTTSSITASLT
RDTTDYRLDPTTGMVNNISIEVAGLGGTSRFIRYFGDTSLFFPMKWSTVLSLRGALGYIQGIGKDVPIDERFFAGGINTI
RGYEGRSISPYKRTSTGEAAFIGGDKEAVFNLEYTFPLLKDAGLKGVAFFDAGNVYDTGDTMFSSFRMSYGAGIRWVSPL
GPLRLEYGIPINPRDGIDKTSGKFEFSIGSFF

Sequences:

>Translated_752_residues
MIRLHATRVGIAAAVVLAAQGAFAEGEKISDVQVRGNRRIDAAAILNAVTLKAGDLFYVEKVDADIRAIYRLGQFQDVKA
DTEKSDGGVVLVYTVVEKPIIREIKIDGAKQISTDKVREALGLKTNTIFSQKELTLSAKKVKKLYADEGYYLAEVDVKGE
KRSGNDVRVVVAITEGEKVLIKAIRFEGNKAFPDKKLRGVMETKEKWFLSWLTGAGTYKDEVLKNDVNLIADLYFNNGYV
NVKVGEPDVKVLEDRSGLAVTIGITEGDQYKTGSIGFKGDLLEKEDVLGLGLRVKTGETFNRANLRADVLALTDLYADKG
YAFTNVTPLSKINADKKTVDITFDFEKGEKVFIDRINVIGNTKTRDKVLRREIKLVEGDAYSSTGLKKSKQSLMNLGFFE
EVNIATAKGSADNKLDVNVEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLKANLAASIGGKSSTYNVGLTDPY
FLDTRWTVGADIYRTERDYLDFTRRATGGDIKAGYPLSDTMRTLWMYKYEDKKIFDVNVSSEDIIPETTSTTSSITASLT
RDTTDYRLDPTTGMVNNISIEVAGLGGTSRFIRYFGDTSLFFPMKWSTVLSLRGALGYIQGIGKDVPIDERFFAGGINTI
RGYEGRSISPYKRTSTGEAAFIGGDKEAVFNLEYTFPLLKDAGLKGVAFFDAGNVYDTGDTMFSSFRMSYGAGIRWVSPL
GPLRLEYGIPINPRDGIDKTSGKFEFSIGSFF
>Mature_752_residues
MIRLHATRVGIAAAVVLAAQGAFAEGEKISDVQVRGNRRIDAAAILNAVTLKAGDLFYVEKVDADIRAIYRLGQFQDVKA
DTEKSDGGVVLVYTVVEKPIIREIKIDGAKQISTDKVREALGLKTNTIFSQKELTLSAKKVKKLYADEGYYLAEVDVKGE
KRSGNDVRVVVAITEGEKVLIKAIRFEGNKAFPDKKLRGVMETKEKWFLSWLTGAGTYKDEVLKNDVNLIADLYFNNGYV
NVKVGEPDVKVLEDRSGLAVTIGITEGDQYKTGSIGFKGDLLEKEDVLGLGLRVKTGETFNRANLRADVLALTDLYADKG
YAFTNVTPLSKINADKKTVDITFDFEKGEKVFIDRINVIGNTKTRDKVLRREIKLVEGDAYSSTGLKKSKQSLMNLGFFE
EVNIATAKGSADNKLDVNVEVKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLKANLAASIGGKSSTYNVGLTDPY
FLDTRWTVGADIYRTERDYLDFTRRATGGDIKAGYPLSDTMRTLWMYKYEDKKIFDVNVSSEDIIPETTSTTSSITASLT
RDTTDYRLDPTTGMVNNISIEVAGLGGTSRFIRYFGDTSLFFPMKWSTVLSLRGALGYIQGIGKDVPIDERFFAGGINTI
RGYEGRSISPYKRTSTGEAAFIGGDKEAVFNLEYTFPLLKDAGLKGVAFFDAGNVYDTGDTMFSSFRMSYGAGIRWVSPL
GPLRLEYGIPINPRDGIDKTSGKFEFSIGSFF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=437, Percent_Identity=24.7139588100687, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1786374, Length=815, Percent_Identity=27.361963190184, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1790666, Length=483, Percent_Identity=25.2587991718427, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 82480; Mature: 82480

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLHATRVGIAAAVVLAAQGAFAEGEKISDVQVRGNRRIDAAAILNAVTLKAGDLFYVE
CEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHEEEEEECCCEEEEE
KVDADIRAIYRLGQFQDVKADTEKSDGGVVLVYTVVEKPIIREIKIDGAKQISTDKVREA
ECCHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHH
LGLKTNTIFSQKELTLSAKKVKKLYADEGYYLAEVDVKGEKRSGNDVRVVVAITEGEKVL
HCCCCCEEECCHHEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCEEE
IKAIRFEGNKAFPDKKLRGVMETKEKWFLSWLTGAGTYKDEVLKNDVNLIADLYFNNGYV
EEEEEECCCCCCCCHHHHHHHHHHHHHEEHHHCCCCCCHHHHHHCCHHEEEEEEECCCEE
NVKVGEPDVKVLEDRSGLAVTIGITEGDQYKTGSIGFKGDLLEKEDVLGLGLRVKTGETF
EEEECCCCCEEEECCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEEEECCCCC
NRANLRADVLALTDLYADKGYAFTNVTPLSKINADKKTVDITFDFEKGEKVFIDRINVIG
CCCCCEEHEEEEEHHHCCCCEEEECCCCHHHCCCCCEEEEEEEECCCCCEEEEEEEEECC
NTKTRDKVLRREIKLVEGDAYSSTGLKKSKQSLMNLGFFEEVNIATAKGSADNKLDVNVE
CCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCEEECEEEEECCCCCCEEEEEEE
VKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLKANLAASIGGKSSTYNVGLTDPY
EECCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEEEECCCCCE
FLDTRWTVGADIYRTERDYLDFTRRATGGDIKAGYPLSDTMRTLWMYKYEDKKIFDVNVS
EECCCEEECCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEECCCEEEEEECC
SEDIIPETTSTTSSITASLTRDTTDYRLDPTTGMVNNISIEVAGLGGTSRFIRYFGDTSL
CCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEEEEECCCHHHHHHHCCCCEE
FFPMKWSTVLSLRGALGYIQGIGKDVPIDERFFAGGINTIRGYEGRSISPYKRTSTGEAA
EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEE
FIGGDKEAVFNLEYTFPLLKDAGLKGVAFFDAGNVYDTGDTMFSSFRMSYGAGIRWVSPL
EECCCCCEEEEEEEECCHHHCCCCCEEEEEECCCEEECCHHHHHHHHHHHCCCEEEECCC
GPLRLEYGIPINPRDGIDKTSGKFEFSIGSFF
CCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MIRLHATRVGIAAAVVLAAQGAFAEGEKISDVQVRGNRRIDAAAILNAVTLKAGDLFYVE
CEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHEEEEEECCCEEEEE
KVDADIRAIYRLGQFQDVKADTEKSDGGVVLVYTVVEKPIIREIKIDGAKQISTDKVREA
ECCHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCHHHHHHH
LGLKTNTIFSQKELTLSAKKVKKLYADEGYYLAEVDVKGEKRSGNDVRVVVAITEGEKVL
HCCCCCEEECCHHEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCEEE
IKAIRFEGNKAFPDKKLRGVMETKEKWFLSWLTGAGTYKDEVLKNDVNLIADLYFNNGYV
EEEEEECCCCCCCCHHHHHHHHHHHHHEEHHHCCCCCCHHHHHHCCHHEEEEEEECCCEE
NVKVGEPDVKVLEDRSGLAVTIGITEGDQYKTGSIGFKGDLLEKEDVLGLGLRVKTGETF
EEEECCCCCEEEECCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEEEECCCCC
NRANLRADVLALTDLYADKGYAFTNVTPLSKINADKKTVDITFDFEKGEKVFIDRINVIG
CCCCCEEHEEEEEHHHCCCCEEEECCCCHHHCCCCCEEEEEEEECCCCCEEEEEEEEECC
NTKTRDKVLRREIKLVEGDAYSSTGLKKSKQSLMNLGFFEEVNIATAKGSADNKLDVNVE
CCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCEEECEEEEECCCCCCEEEEEEE
VKEKPTGTFSIGAGYSSLDGLIGQGSVSQGNFLGLGLKANLAASIGGKSSTYNVGLTDPY
EECCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEEECEEEECCCCCCEEEECCCCCE
FLDTRWTVGADIYRTERDYLDFTRRATGGDIKAGYPLSDTMRTLWMYKYEDKKIFDVNVS
EECCCEEECCCEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEECCCEEEEEECC
SEDIIPETTSTTSSITASLTRDTTDYRLDPTTGMVNNISIEVAGLGGTSRFIRYFGDTSL
CCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCEEEEEEEEEECCCHHHHHHHCCCCEE
FFPMKWSTVLSLRGALGYIQGIGKDVPIDERFFAGGINTIRGYEGRSISPYKRTSTGEAA
EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEE
FIGGDKEAVFNLEYTFPLLKDAGLKGVAFFDAGNVYDTGDTMFSSFRMSYGAGIRWVSPL
EECCCCCEEEEEEEECCHHHCCCCCEEEEEECCCEEECCHHHHHHHHHHHCCCEEEECCC
GPLRLEYGIPINPRDGIDKTSGKFEFSIGSFF
CCEEEEECCCCCCCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]