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The map label for this gene is rfaC [H]

Identifier: 78223534

GI number: 78223534

Start: 2638378

End: 2639478

Strand: Reverse

Name: rfaC [H]

Synonym: Gmet_2331

Alternate gene names: 78223534

Gene position: 2639478-2638378 (Counterclockwise)

Preceding gene: 78223535

Following gene: 78223533

Centisome position: 66.03

GC content: 62.13

Gene sequence:

>1101_bases
ATGGTAAAAACACGTAACCCGGAACTCAATCCCATGCCGCTCCGTGTCCTCATCGTCAAAGTCTCCGCCCTCGGCGACGT
CATCCACGCCCTGCCGGTCCTCGACTATCTCCACCAGGTATCGTCCGGCATTGAGATCGACTGGGTGGTGGAGGAAGGGA
ACCGGGATATCCTGGAGGGGCACCCGTTGCTGCGCCGGCTCCATGTTGTCCGCACCAAGGCATGGCGGCGCGATCCCCTG
TCCGACACGACCCGCCGGGAAATCTCCGCCATCCGCCGGGAATTGCGCGAAGCCGACTACGACATCGCTTTCGACCTCCA
GGGGAACGTCAAGAGCGGCATCATCACGTGGCTCTCCGGTGCCCGGCGCCGCTACGGCTTCGACCGCGAAGGGGTGAGGG
AATCGCTCAATCTTCTCTTTACCACGAACCAGGTGCCCCTCCGCCGGCAGGACCATCACATTTCGCACCGCTCCCTCCGG
GTAGTCAGTGTCCCCCTGGGTCGAGACTACACGGGGATGACCATCGGGCCCGACATTTTCACCTCTCCCGAGGACGATGC
CGCTGCCGAAGCGCTCCTGGCAACCCTCGATGACGGCCTTGCCTTCCTTTTCCACAACGGCACCACCTGGACCACCAAGC
TCTGGTACGAGGAAGGGTGGATCGGGCTGGGCAGAAAGGTCCTCGGCAGATACCCGGACTCAACCATTCTCCTCTCCTGG
GGAAACGAACAGGAGAAAAATGCTGCCGAAACCATAGCCGCCGGCATCGGCCGAGGCGTGAGGGTTTTGCCGAAATTGAG
TCTCAAGGGTTTCTGCGCCCTACTCAAAAAGGTCGATCTGGTGGTCGGAGGGGACACCGGGCCGATTCACATGGCCGCCG
CAGTGGGGACTCCGACGGTTTCCTTCTACCGCTCCACTGACGGGAGACGCAACGGTCCCCTGGGCGACCAGCATGTGGTC
ATCCAGTCACCACTCGACTGCACGGCCTGTCTGCGCAAGTCGTGCGACAAGGATGCTCCCTGCCGCGCCAGCATCACTGC
GGATGTTCTTATGTCAGGCATCGAAAAGCTCCTGACGCCCCCCTTTCCATCGGCCGGGTGA

Upstream 100 bases:

>100_bases
CCGACGGGAACAGCCGTATCGGAAGAGGATATTGTCGATATCTGCTCAATTATTCGGCTTGTACTAAAGAATGGGGTTGA
AGTGACTAACGCCTTGGCCA

Downstream 100 bases:

>100_bases
TGTGTTACACTGCCTCCTCTTCAATAGCCCGATAAATCAGAAGGATAGCGCACCATGTCCACGGTTCTCGTCACCGGCGC
CGCCGGCTTCATCGGATTTC

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MVKTRNPELNPMPLRVLIVKVSALGDVIHALPVLDYLHQVSSGIEIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPL
SDTTRREISAIRRELREADYDIAFDLQGNVKSGIITWLSGARRRYGFDREGVRESLNLLFTTNQVPLRRQDHHISHRSLR
VVSVPLGRDYTGMTIGPDIFTSPEDDAAAEALLATLDDGLAFLFHNGTTWTTKLWYEEGWIGLGRKVLGRYPDSTILLSW
GNEQEKNAAETIAAGIGRGVRVLPKLSLKGFCALLKKVDLVVGGDTGPIHMAAAVGTPTVSFYRSTDGRRNGPLGDQHVV
IQSPLDCTACLRKSCDKDAPCRASITADVLMSGIEKLLTPPFPSAG

Sequences:

>Translated_366_residues
MVKTRNPELNPMPLRVLIVKVSALGDVIHALPVLDYLHQVSSGIEIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPL
SDTTRREISAIRRELREADYDIAFDLQGNVKSGIITWLSGARRRYGFDREGVRESLNLLFTTNQVPLRRQDHHISHRSLR
VVSVPLGRDYTGMTIGPDIFTSPEDDAAAEALLATLDDGLAFLFHNGTTWTTKLWYEEGWIGLGRKVLGRYPDSTILLSW
GNEQEKNAAETIAAGIGRGVRVLPKLSLKGFCALLKKVDLVVGGDTGPIHMAAAVGTPTVSFYRSTDGRRNGPLGDQHVV
IQSPLDCTACLRKSCDKDAPCRASITADVLMSGIEKLLTPPFPSAG
>Mature_366_residues
MVKTRNPELNPMPLRVLIVKVSALGDVIHALPVLDYLHQVSSGIEIDWVVEEGNRDILEGHPLLRRLHVVRTKAWRRDPL
SDTTRREISAIRRELREADYDIAFDLQGNVKSGIITWLSGARRRYGFDREGVRESLNLLFTTNQVPLRRQDHHISHRSLR
VVSVPLGRDYTGMTIGPDIFTSPEDDAAAEALLATLDDGLAFLFHNGTTWTTKLWYEEGWIGLGRKVLGRYPDSTILLSW
GNEQEKNAAETIAAGIGRGVRVLPKLSLKGFCALLKKVDLVVGGDTGPIHMAAAVGTPTVSFYRSTDGRRNGPLGDQHVV
IQSPLDCTACLRKSCDKDAPCRASITADVLMSGIEKLLTPPFPSAG

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=330, Percent_Identity=33.6363636363636, Blast_Score=151, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 40455; Mature: 40455

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTRNPELNPMPLRVLIVKVSALGDVIHALPVLDYLHQVSSGIEIDWVVEEGNRDILEG
CCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
HPLLRRLHVVRTKAWRRDPLSDTTRREISAIRRELREADYDIAFDLQGNVKSGIITWLSG
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
ARRRYGFDREGVRESLNLLFTTNQVPLRRQDHHISHRSLRVVSVPLGRDYTGMTIGPDIF
HHHHCCCCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCC
TSPEDDAAAEALLATLDDGLAFLFHNGTTWTTKLWYEEGWIGLGRKVLGRYPDSTILLSW
CCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCCHHCCHHHHCCCCCCEEEEEC
GNEQEKNAAETIAAGIGRGVRVLPKLSLKGFCALLKKVDLVVGGDTGPIHMAAAVGTPTV
CCCCHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHHCEEECCCCCCEEEEEECCCCCE
SFYRSTDGRRNGPLGDQHVVIQSPLDCTACLRKSCDKDAPCRASITADVLMSGIEKLLTP
EEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
PFPSAG
CCCCCC
>Mature Secondary Structure
MVKTRNPELNPMPLRVLIVKVSALGDVIHALPVLDYLHQVSSGIEIDWVVEEGNRDILEG
CCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
HPLLRRLHVVRTKAWRRDPLSDTTRREISAIRRELREADYDIAFDLQGNVKSGIITWLSG
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
ARRRYGFDREGVRESLNLLFTTNQVPLRRQDHHISHRSLRVVSVPLGRDYTGMTIGPDIF
HHHHCCCCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCC
TSPEDDAAAEALLATLDDGLAFLFHNGTTWTTKLWYEEGWIGLGRKVLGRYPDSTILLSW
CCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEECCCHHCCHHHHCCCCCCEEEEEC
GNEQEKNAAETIAAGIGRGVRVLPKLSLKGFCALLKKVDLVVGGDTGPIHMAAAVGTPTV
CCCCHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHHCEEECCCCCCEEEEEECCCCCE
SFYRSTDGRRNGPLGDQHVVIQSPLDCTACLRKSCDKDAPCRASITADVLMSGIEKLLTP
EEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
PFPSAG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]