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The map label for this gene is 78223375

Identifier: 78223375

GI number: 78223375

Start: 2447853

End: 2449457

Strand: Direct

Name: 78223375

Synonym: Gmet_2168

Alternate gene names: NA

Gene position: 2447853-2449457 (Clockwise)

Preceding gene: 78223373

Following gene: 78223393

Centisome position: 61.24

GC content: 62.68

Gene sequence:

>1605_bases
ATGCGAATCATCAGTAAGACATCGGTATTTTTCGCCTTTGCCATGGCACTGGCGACATTTCAGCTCTGGCGCGGCGAGGC
ACAGGCATACCCCGCATACTTCACGGCCAACTGCGCCGGCTGCCACGCCTCACCGGTAGTGGCCACCTGCAACGGTTGCC
ATCACCACGGCCCGGTCGGGTTGAAGGGAACCACGGACAAGGCAACCTATGCGCCGGGAGAGGCCGTATCGGTTACCATC
AGCGGCGGAAGCCAGAGCGGCTGGGTCAGGGCCATCCTCTACGATCAGAACAATACGCGCGTTGCCGTATCGAACGGCAA
TGCCAGCGGCATGGGAAGCGCGACCACCTTCCCGGCAGTGCTGAGCGCGCCGGCGCCCACGACCCCCGGCACCTACACCT
GGAAAGCGGCCTGGTACGGCAACAGCTATGATACCGGCAATGCAACCGCGGCCGCCCACGGCGAAGTGTCGGTGAACACC
AACTCCTTCACCGTCGTGGCCCCCGCTGACACGACTGTTCCCGTGGTCAGCAGCTTTACCCTTCCCGCCACCACCACCAA
CCTGACCGTGCCGGTCACGAGCTTCACCGCCACCGACAACGTGGCTGTCACCGGTTACCTGATCACCAAGAGCGCCACTG
CCCCGACAGCGACCACCGCCGGCTGGACAGCCGCCGCACCGGCCACTGTCAGCGCCGCTGCCGGCAAAAACACCTTCTAT
GCCTGGGCCAAGGACGCGGTGGGGAACGTCTCTCTTGCCAAAAGCGCCATCGTTACCGTCGTCGGCAAGATCATCTCCAG
GGACTTCGATGGCGACGGCAAGACCGACCTAGCCGTGCTGGATCCCCAGAGCTACAACTGGTTCATTCTGAACAGCGCTA
CCGGCAAGCAGAATGTCGTGAATTACGGCACCTCCGGCGATATCGCCGTCCCCGGCGACTACGACGGCGACAAAAAAGCC
GATATCGCGGTATGGCGCACCTCTACCGGCACCTGGTACATCACCAACAGCGCCACCGGCGCCCAGAGCGTCGTGAAATT
CGGAACGACCGGCGACATCCCCGTCCCCGGCGACTACGATGTGGACGGCAAGACCGATATCGCGGTATGGCGACCCTCCA
ACGGCACCTGGTACGTCATCAACAGCTCCACCGGCGCCCAGAGCGTCGTGAACTTCGGAACCTCGGGAGATACCCCCGTT
GCTGGCGACTATGACGGCGACGGCAAGACTGATATGGCCGTATGGCGCCCCTCCAACGGCACCTGGTACGTCATCAACAG
CTCCACCGGCGCCCAGAGCGTCGTGAAGTACGGGGCAGCCACCGACACCCCCGTCCCCGGCGACTACGACGGCGACGGCA
AGACCGATATCGCGGTATGGCGCAGCGGCACCTGGTTCATCACGAACAGTGCCACAAAAACGCAAAGTGTCGTCAATTTC
GGGACTACCGGCGACATCCCGGTTCCGGGCGATTACGACGGTACGGGCAGGACTGAAAGCGCTGTCTGGCGTTCAGCGGA
AGGGAACTGGTATATCATGAACGGCATGACCGGCGCCCAACGGATCCTTCAGTTGGGGATACCGACCGACAAGCCCATCA
AGTAA

Upstream 100 bases:

>100_bases
CAGCACAGGGGAGGAATTATTTCAAAAGATGTCACAACGAGGAGAGCAGTTGTTTTCGGACGAAGAAACGTATCTTCCAA
GGAATGGAAAAGGAGTCTGC

Downstream 100 bases:

>100_bases
GATTCCGTCTCCCAAGGCCGGCAGAAATGCCGGCCTTTTTTTCGGCCGGGATTGCCCCGGACAGGAGCACATCACCCCTC
CTCTCCCCGCAATGCATTTC

Product: Integrins alpha chain

Products: NA

Alternate protein names: FG-GAP Repeat-Containing Protein; Peptidase S1 And S6 Chymotrypsin/Hap; Fibronectin Type III Domain-Containing Protein; Cytoplasmic Membrane Protein; Peptidase; CHAP Domain-Containing Protein; Metallophosphoesterase; Excalibur Domain-Containing Protein; Cell Surface Protein; Cna B Domain Protein

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MRIISKTSVFFAFAMALATFQLWRGEAQAYPAYFTANCAGCHASPVVATCNGCHHHGPVGLKGTTDKATYAPGEAVSVTI
SGGSQSGWVRAILYDQNNTRVAVSNGNASGMGSATTFPAVLSAPAPTTPGTYTWKAAWYGNSYDTGNATAAAHGEVSVNT
NSFTVVAPADTTVPVVSSFTLPATTTNLTVPVTSFTATDNVAVTGYLITKSATAPTATTAGWTAAAPATVSAAAGKNTFY
AWAKDAVGNVSLAKSAIVTVVGKIISRDFDGDGKTDLAVLDPQSYNWFILNSATGKQNVVNYGTSGDIAVPGDYDGDKKA
DIAVWRTSTGTWYITNSATGAQSVVKFGTTGDIPVPGDYDVDGKTDIAVWRPSNGTWYVINSSTGAQSVVNFGTSGDTPV
AGDYDGDGKTDMAVWRPSNGTWYVINSSTGAQSVVKYGAATDTPVPGDYDGDGKTDIAVWRSGTWFITNSATKTQSVVNF
GTTGDIPVPGDYDGTGRTESAVWRSAEGNWYIMNGMTGAQRILQLGIPTDKPIK

Sequences:

>Translated_534_residues
MRIISKTSVFFAFAMALATFQLWRGEAQAYPAYFTANCAGCHASPVVATCNGCHHHGPVGLKGTTDKATYAPGEAVSVTI
SGGSQSGWVRAILYDQNNTRVAVSNGNASGMGSATTFPAVLSAPAPTTPGTYTWKAAWYGNSYDTGNATAAAHGEVSVNT
NSFTVVAPADTTVPVVSSFTLPATTTNLTVPVTSFTATDNVAVTGYLITKSATAPTATTAGWTAAAPATVSAAAGKNTFY
AWAKDAVGNVSLAKSAIVTVVGKIISRDFDGDGKTDLAVLDPQSYNWFILNSATGKQNVVNYGTSGDIAVPGDYDGDKKA
DIAVWRTSTGTWYITNSATGAQSVVKFGTTGDIPVPGDYDVDGKTDIAVWRPSNGTWYVINSSTGAQSVVNFGTSGDTPV
AGDYDGDGKTDMAVWRPSNGTWYVINSSTGAQSVVKYGAATDTPVPGDYDGDGKTDIAVWRSGTWFITNSATKTQSVVNF
GTTGDIPVPGDYDGTGRTESAVWRSAEGNWYIMNGMTGAQRILQLGIPTDKPIK
>Mature_534_residues
MRIISKTSVFFAFAMALATFQLWRGEAQAYPAYFTANCAGCHASPVVATCNGCHHHGPVGLKGTTDKATYAPGEAVSVTI
SGGSQSGWVRAILYDQNNTRVAVSNGNASGMGSATTFPAVLSAPAPTTPGTYTWKAAWYGNSYDTGNATAAAHGEVSVNT
NSFTVVAPADTTVPVVSSFTLPATTTNLTVPVTSFTATDNVAVTGYLITKSATAPTATTAGWTAAAPATVSAAAGKNTFY
AWAKDAVGNVSLAKSAIVTVVGKIISRDFDGDGKTDLAVLDPQSYNWFILNSATGKQNVVNYGTSGDIAVPGDYDGDKKA
DIAVWRTSTGTWYITNSATGAQSVVKFGTTGDIPVPGDYDVDGKTDIAVWRPSNGTWYVINSSTGAQSVVNFGTSGDTPV
AGDYDGDGKTDMAVWRPSNGTWYVINSSTGAQSVVKYGAATDTPVPGDYDGDGKTDIAVWRSGTWFITNSATKTQSVVNF
GTTGDIPVPGDYDGTGRTESAVWRSAEGNWYIMNGMTGAQRILQLGIPTDKPIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55493; Mature: 55493

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIISKTSVFFAFAMALATFQLWRGEAQAYPAYFTANCAGCHASPVVATCNGCHHHGPVG
CCEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCC
LKGTTDKATYAPGEAVSVTISGGSQSGWVRAILYDQNNTRVAVSNGNASGMGSATTFPAV
CCCCCCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH
LSAPAPTTPGTYTWKAAWYGNSYDTGNATAAAHGEVSVNTNSFTVVAPADTTVPVVSSFT
EECCCCCCCCCEEEEEEEECCCCCCCCEEEEECCEEEECCCCEEEEECCCCCEEEEEEEE
LPATTTNLTVPVTSFTATDNVAVTGYLITKSATAPTATTAGWTAAAPATVSAAAGKNTFY
CCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEE
AWAKDAVGNVSLAKSAIVTVVGKIISRDFDGDGKTDLAVLDPQSYNWFILNSATGKQNVV
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCEE
NYGTSGDIAVPGDYDGDKKADIAVWRTSTGTWYITNSATGAQSVVKFGTTGDIPVPGDYD
EECCCCCEEECCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHEEECCCCCCCCCCCCC
VDGKTDIAVWRPSNGTWYVINSSTGAQSVVNFGTSGDTPVAGDYDGDGKTDMAVWRPSNG
CCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
TWYVINSSTGAQSVVKYGAATDTPVPGDYDGDGKTDIAVWRSGTWFITNSATKTQSVVNF
EEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCEEEEE
GTTGDIPVPGDYDGTGRTESAVWRSAEGNWYIMNGMTGAQRILQLGIPTDKPIK
CCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEECCCHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MRIISKTSVFFAFAMALATFQLWRGEAQAYPAYFTANCAGCHASPVVATCNGCHHHGPVG
CCEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCC
LKGTTDKATYAPGEAVSVTISGGSQSGWVRAILYDQNNTRVAVSNGNASGMGSATTFPAV
CCCCCCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH
LSAPAPTTPGTYTWKAAWYGNSYDTGNATAAAHGEVSVNTNSFTVVAPADTTVPVVSSFT
EECCCCCCCCCEEEEEEEECCCCCCCCEEEEECCEEEECCCCEEEEECCCCCEEEEEEEE
LPATTTNLTVPVTSFTATDNVAVTGYLITKSATAPTATTAGWTAAAPATVSAAAGKNTFY
CCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEE
AWAKDAVGNVSLAKSAIVTVVGKIISRDFDGDGKTDLAVLDPQSYNWFILNSATGKQNVV
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCEE
NYGTSGDIAVPGDYDGDKKADIAVWRTSTGTWYITNSATGAQSVVKFGTTGDIPVPGDYD
EECCCCCEEECCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHEEECCCCCCCCCCCCC
VDGKTDIAVWRPSNGTWYVINSSTGAQSVVNFGTSGDTPVAGDYDGDGKTDMAVWRPSNG
CCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
TWYVINSSTGAQSVVKYGAATDTPVPGDYDGDGKTDIAVWRSGTWFITNSATKTQSVVNF
EEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCEEEEE
GTTGDIPVPGDYDGTGRTESAVWRSAEGNWYIMNGMTGAQRILQLGIPTDKPIK
CCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEECCCHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA