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The map label for this gene is badM [H]

Identifier: 78223304

GI number: 78223304

Start: 2360592

End: 2361023

Strand: Direct

Name: badM [H]

Synonym: Gmet_2097

Alternate gene names: 78223304

Gene position: 2360592-2361023 (Clockwise)

Preceding gene: 78223303

Following gene: 78223307

Centisome position: 59.05

GC content: 54.4

Gene sequence:

>432_bases
ATGAGACTCAATAAAGCCAGCCTTTTCGCCCTGTTTGCCGTACTGGAACTGGCCAGCGACCCTGAGCGGCAATTGTCGAC
CGGCGAGATCGCTTCCAAATACGGCGTCTCTCCCCATCATCTCGCAAAAATCATGCGCGACCTGGTCCACGAAGGACTGG
TGCAGGCAGTACGCGGCGTTGGCGGCGGCTATCGGTTTTCAGGCAATATCCAGCGAACGACGTTGCTGGATATAATTCAG
ATGTTCGAAAATCTGGAATCCGAGCTTGATGTGCCCCACGGAAGCCCTTTAGACGTCCCGATACTTGAGGAACTGAAGAG
CATCGCAAACGAAATCGACGACCTCACCAAAGCAGTTCTGGACACAATCACCCTGGAAACCGCTCTGAAGGGCGCACGCC
AGCGGGTTGAGATCAGAACCCAGAACAACTGA

Upstream 100 bases:

>100_bases
GGAAAAACCGCTCGACTGACTGAAAGGTTGCCGGCAGCCCTCTGCAATACAAAGTGCATGGCAAAACTCTACATACGTTT
TACCCTGGAGAGGGAATACC

Downstream 100 bases:

>100_bases
ACCCTTTGCCTCAACGAACGGTCCGGCACCGTCCCGTCAATCGTTTACCACCCTGCCCCGCCCCTTCTTCAGTGCAGCAC
CCTTTCCCCTTCACTCCCCG

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGVGGGYRFSGNIQRTTLLDIIQ
MFENLESELDVPHGSPLDVPILEELKSIANEIDDLTKAVLDTITLETALKGARQRVEIRTQNN

Sequences:

>Translated_143_residues
MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGVGGGYRFSGNIQRTTLLDIIQ
MFENLESELDVPHGSPLDVPILEELKSIANEIDDLTKAVLDTITLETALKGARQRVEIRTQNN
>Mature_143_residues
MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGVGGGYRFSGNIQRTTLLDIIQ
MFENLESELDVPHGSPLDVPILEELKSIANEIDDLTKAVLDTITLETALKGARQRVEIRTQNN

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15790; Mature: 15790

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPILEELKSIANEIDDLTKAVL
CCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DTITLETALKGARQRVEIRTQNN
HHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPILEELKSIANEIDDLTKAVL
CCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DTITLETALKGARQRVEIRTQNN
HHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9177244 [H]