Click here to switch to the map view.

The map label for this gene is fadF [H]

Identifier: 78223272

GI number: 78223272

Start: 2321547

End: 2323523

Strand: Reverse

Name: fadF [H]

Synonym: Gmet_2065

Alternate gene names: 78223272

Gene position: 2323523-2321547 (Counterclockwise)

Preceding gene: 78223273

Following gene: 78223271

Centisome position: 58.13

GC content: 63.18

Gene sequence:

>1977_bases
ATGGCAATCAACCACTCGCTCTTCATTCCGCTCTTCGTCGTGGCCGTCGCGACTTTCTGCTTCAGCTGCTACCAGCGCCT
GCAGCTGGTCGCCGTCGGCGCTTCCGAGAACCGCTTCGACAACCCGGCTGAGCGGCTGGCTGGGATGTTCTCCTATGCCT
TCGGCCAGAAGCGGGTCCTGGCACGTCCCTACGGTTTCAACCACTTCTTCCTCTTTTGGGCGTTCATGCTCCTGCTGGTG
GCCAACGGGGCGTTTCTCCTGGAGGGGCTCTTCCCGAGCTTCAGCCTGACGGCACTGCCGGCGCCGCTTCACCACGCCCT
TGAGTTCGTCTTTGACATCGTGTCGCTTGTGGCCCTGGTCAGCGTGGCAATCGCCTTTGTGCGGCGGGTCCTCTTTCCTC
CCGCGTACCTGGGGAACGACTATACCTCGCCCAGGAGCGGCGAGGCCCTCCTTATCCTGGCCATGATCGCCACGCTGATG
ATTGCCTTCTTCCTCCTCAACGCCGCCCAGATCGCCATGGGGCAGCCGGCGGGCTGGAAGCCCGTATCGTCCGCCATAGC
CAGCCTCCTGGACGGATTTTCCGGAAATCCCCTGGAGAGCATCGCCACCATATCGTGGTGGGTCCACGCCGTCGTGCTCC
TCCTCTTCATGAACCTACTCCCCCGCAGTAAGCACATGCACATCCTCACCGCCATACCCAACTGCTATTTCCGGAGCCTG
GACAAGCCCAATGTCCAGCCCCGGGAAGAATTCAAGGTGGGTAATCGCTTTGGGGTGAGCACGGTGGAGCAGTTCTCGTG
GAAGGACCTCCTCGACAGCCTCTCCTGCACCGAATGCGGCCGCTGCCAGGACCTCTGCCCGGCCCACAACACCGGCAAGC
CCCTGAACCCGCGCCGTATCGTCCATGACATCAAGGTGAACCTCATGGATAACGGGGCGGCTTTGAAGCATGGCGACCGG
GGCATTGTCCCCCTGATCGGTCCCCAGGGTGAAGGGTCCAATCACGAGGATGCCCTCTGGTCCTGCACCACCTGCGGCGC
CTGCACGAGCGTCTGCCCGGTCCTCATCGAGCAGATGCCGAAGATCATCAAGATGCGCCGCCACCTGGTCCAGGAGAAGG
CCCGGTTCCCTGAGGAACTCCTGAACCTCTTCGAGAACATGGAGCAGCGGAGCAACCCCTGGGGGATCGCCCCGTCGGAC
CGGGGGAAGTGGGCCACGCATCTGGGCGAGCGTCCCTTCAAGGCCGGGGAGACTGACTATCTCTTCTTTGCGGGGTGCGC
CGGCTCCTTCGATAGCCGCGCCAAGCACGTCACCGTGGCCCTGGCCACGATCCTGGACAAGGCCGGGGTTTCCTGGGGAA
TCCTGGGGCGTGAAGAGCAGTGCTGCGGCGACAGCGTGCGGCGCCTGGGGAACGAGTTCGTCTTCGACAAGATGGCCAAA
GAGAACGTGGCCCTCTTCAAGGAGCGGGGTGTTACCCGGATCGTCACCCAGTGCCCCCACTGCTTCAGCACCCTCAAGAA
CGATTACAGGCAGTACGGGCTGGAGGTGGAGGTGCTCCACCACAGCGAGCTGATCGCAAAGCTCGTGGAGCAGGGGAAGC
TCAAGCTCCCCAAACAGGCCGATCAGGGGAAGATTGTTTTCCATGACTCCTGCTACCTGGGACGGCACAATGACACCTAC
GAGGCGCCCCGGTCTGTCATCAAGGCGGCCACCGGCAAGGCCCCGGCCGAGTTCGAGCGCAACCAGGAGAACGGCTTCTG
CTGCGGCGCCGGCGGCGGCCGCATGTGGATGGAGGAGCAGATCGGGAGCCGGATCAACCTGGAACGGGTGAAAGAGGCCC
TCAAGCAGCAGCCCGACACCCTCTGCGTCAGCTGTCCCTACTGCATGACCATGATGGAGGACGGTCTCAAGGACGAAGGG
GCTGAGCAGGTGCGGGTGAAGGACATCGCCGAGGTGATGGCCGAGGCCATGGCGTAA

Upstream 100 bases:

>100_bases
CAAGGTGAGAAGTCTGAAAGGCCAGCGCGGCGGTGTCATTCCCGACCGGGTCGCGGTCTGATCCTTCGCCGTCATCGCAA
TATCGTTTGTGAGGTGTATC

Downstream 100 bases:

>100_bases
GGGGAATCCCCCGGCACTGCCGGGGGATTGCTTTGTTGTACTGTTCCTGACAGCCGGAGGGAACACGACCCATGAAGACA
AAAAACAAAACGGTGCCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 657

Protein sequence:

>658_residues
MAINHSLFIPLFVVAVATFCFSCYQRLQLVAVGASENRFDNPAERLAGMFSYAFGQKRVLARPYGFNHFFLFWAFMLLLV
ANGAFLLEGLFPSFSLTALPAPLHHALEFVFDIVSLVALVSVAIAFVRRVLFPPAYLGNDYTSPRSGEALLILAMIATLM
IAFFLLNAAQIAMGQPAGWKPVSSAIASLLDGFSGNPLESIATISWWVHAVVLLLFMNLLPRSKHMHILTAIPNCYFRSL
DKPNVQPREEFKVGNRFGVSTVEQFSWKDLLDSLSCTECGRCQDLCPAHNTGKPLNPRRIVHDIKVNLMDNGAALKHGDR
GIVPLIGPQGEGSNHEDALWSCTTCGACTSVCPVLIEQMPKIIKMRRHLVQEKARFPEELLNLFENMEQRSNPWGIAPSD
RGKWATHLGERPFKAGETDYLFFAGCAGSFDSRAKHVTVALATILDKAGVSWGILGREEQCCGDSVRRLGNEFVFDKMAK
ENVALFKERGVTRIVTQCPHCFSTLKNDYRQYGLEVEVLHHSELIAKLVEQGKLKLPKQADQGKIVFHDSCYLGRHNDTY
EAPRSVIKAATGKAPAEFERNQENGFCCGAGGGRMWMEEQIGSRINLERVKEALKQQPDTLCVSCPYCMTMMEDGLKDEG
AEQVRVKDIAEVMAEAMA

Sequences:

>Translated_658_residues
MAINHSLFIPLFVVAVATFCFSCYQRLQLVAVGASENRFDNPAERLAGMFSYAFGQKRVLARPYGFNHFFLFWAFMLLLV
ANGAFLLEGLFPSFSLTALPAPLHHALEFVFDIVSLVALVSVAIAFVRRVLFPPAYLGNDYTSPRSGEALLILAMIATLM
IAFFLLNAAQIAMGQPAGWKPVSSAIASLLDGFSGNPLESIATISWWVHAVVLLLFMNLLPRSKHMHILTAIPNCYFRSL
DKPNVQPREEFKVGNRFGVSTVEQFSWKDLLDSLSCTECGRCQDLCPAHNTGKPLNPRRIVHDIKVNLMDNGAALKHGDR
GIVPLIGPQGEGSNHEDALWSCTTCGACTSVCPVLIEQMPKIIKMRRHLVQEKARFPEELLNLFENMEQRSNPWGIAPSD
RGKWATHLGERPFKAGETDYLFFAGCAGSFDSRAKHVTVALATILDKAGVSWGILGREEQCCGDSVRRLGNEFVFDKMAK
ENVALFKERGVTRIVTQCPHCFSTLKNDYRQYGLEVEVLHHSELIAKLVEQGKLKLPKQADQGKIVFHDSCYLGRHNDTY
EAPRSVIKAATGKAPAEFERNQENGFCCGAGGGRMWMEEQIGSRINLERVKEALKQQPDTLCVSCPYCMTMMEDGLKDEG
AEQVRVKDIAEVMAEAMA
>Mature_657_residues
AINHSLFIPLFVVAVATFCFSCYQRLQLVAVGASENRFDNPAERLAGMFSYAFGQKRVLARPYGFNHFFLFWAFMLLLVA
NGAFLLEGLFPSFSLTALPAPLHHALEFVFDIVSLVALVSVAIAFVRRVLFPPAYLGNDYTSPRSGEALLILAMIATLMI
AFFLLNAAQIAMGQPAGWKPVSSAIASLLDGFSGNPLESIATISWWVHAVVLLLFMNLLPRSKHMHILTAIPNCYFRSLD
KPNVQPREEFKVGNRFGVSTVEQFSWKDLLDSLSCTECGRCQDLCPAHNTGKPLNPRRIVHDIKVNLMDNGAALKHGDRG
IVPLIGPQGEGSNHEDALWSCTTCGACTSVCPVLIEQMPKIIKMRRHLVQEKARFPEELLNLFENMEQRSNPWGIAPSDR
GKWATHLGERPFKAGETDYLFFAGCAGSFDSRAKHVTVALATILDKAGVSWGILGREEQCCGDSVRRLGNEFVFDKMAKE
NVALFKERGVTRIVTQCPHCFSTLKNDYRQYGLEVEVLHHSELIAKLVEQGKLKLPKQADQGKIVFHDSCYLGRHNDTYE
APRSVIKAATGKAPAEFERNQENGFCCGAGGGRMWMEEQIGSRINLERVKEALKQQPDTLCVSCPYCMTMMEDGLKDEGA
EQVRVKDIAEVMAEAMA

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 73108; Mature: 72977

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINHSLFIPLFVVAVATFCFSCYQRLQLVAVGASENRFDNPAERLAGMFSYAFGQKRVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHE
ARPYGFNHFFLFWAFMLLLVANGAFLLEGLFPSFSLTALPAPLHHALEFVFDIVSLVALV
ECCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
SVAIAFVRRVLFPPAYLGNDYTSPRSGEALLILAMIATLMIAFFLLNAAQIAMGQPAGWK
HHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVSSAIASLLDGFSGNPLESIATISWWVHAVVLLLFMNLLPRSKHMHILTAIPNCYFRSL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCC
DKPNVQPREEFKVGNRFGVSTVEQFSWKDLLDSLSCTECGRCQDLCPAHNTGKPLNPRRI
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCHHHH
VHDIKVNLMDNGAALKHGDRGIVPLIGPQGEGSNHEDALWSCTTCGACTSVCPVLIEQMP
HHHHEEEEECCCCEEECCCCCCEEEECCCCCCCCCCCHHEECHHHHHHHHHHHHHHHHHH
KIIKMRRHLVQEKARFPEELLNLFENMEQRSNPWGIAPSDRGKWATHLGERPFKAGETDY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
LFFAGCAGSFDSRAKHVTVALATILDKAGVSWGILGREEQCCGDSVRRLGNEFVFDKMAK
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ENVALFKERGVTRIVTQCPHCFSTLKNDYRQYGLEVEVLHHSELIAKLVEQGKLKLPKQA
HHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCC
DQGKIVFHDSCYLGRHNDTYEAPRSVIKAATGKAPAEFERNQENGFCCGAGGGRMWMEEQ
CCCCEEEECCEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCEEEECCCCCCHHHHH
IGSRINLERVKEALKQQPDTLCVSCPYCMTMMEDGLKDEGAEQVRVKDIAEVMAEAMA
HCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AINHSLFIPLFVVAVATFCFSCYQRLQLVAVGASENRFDNPAERLAGMFSYAFGQKRVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHE
ARPYGFNHFFLFWAFMLLLVANGAFLLEGLFPSFSLTALPAPLHHALEFVFDIVSLVALV
ECCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
SVAIAFVRRVLFPPAYLGNDYTSPRSGEALLILAMIATLMIAFFLLNAAQIAMGQPAGWK
HHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PVSSAIASLLDGFSGNPLESIATISWWVHAVVLLLFMNLLPRSKHMHILTAIPNCYFRSL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCC
DKPNVQPREEFKVGNRFGVSTVEQFSWKDLLDSLSCTECGRCQDLCPAHNTGKPLNPRRI
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCHHHH
VHDIKVNLMDNGAALKHGDRGIVPLIGPQGEGSNHEDALWSCTTCGACTSVCPVLIEQMP
HHHHEEEEECCCCEEECCCCCCEEEECCCCCCCCCCCHHEECHHHHHHHHHHHHHHHHHH
KIIKMRRHLVQEKARFPEELLNLFENMEQRSNPWGIAPSDRGKWATHLGERPFKAGETDY
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
LFFAGCAGSFDSRAKHVTVALATILDKAGVSWGILGREEQCCGDSVRRLGNEFVFDKMAK
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ENVALFKERGVTRIVTQCPHCFSTLKNDYRQYGLEVEVLHHSELIAKLVEQGKLKLPKQA
HHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCCCCCC
DQGKIVFHDSCYLGRHNDTYEAPRSVIKAATGKAPAEFERNQENGFCCGAGGGRMWMEEQ
CCCCEEEECCEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCEEEECCCCCCHHHHH
IGSRINLERVKEALKQQPDTLCVSCPYCMTMMEDGLKDEGAEQVRVKDIAEVMAEAMA
HCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]