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The map label for this gene is yccZ [C]

Identifier: 78223237

GI number: 78223237

Start: 2271772

End: 2272620

Strand: Reverse

Name: yccZ [C]

Synonym: Gmet_2030

Alternate gene names: 78223237

Gene position: 2272620-2271772 (Counterclockwise)

Preceding gene: 78223238

Following gene: 78223236

Centisome position: 56.85

GC content: 53.12

Gene sequence:

>849_bases
ATGGAAAGGTTGCAAAGGATGCTGAAGTTTAGCTGTGGATTTATTGCCGTTGTCCTTGTCGTGACGATGCTTTCAGGCAC
GAGTGCTATGGCGTCCGAAGGCTCCGACGGGGATTACGTTGTAGGAGATGGGGATTCCCTTATGATCTCCGTCTGGGGGG
AGAAGGAACTCAGCGGCACGGTTACGGTGCGGCCCGACGGCAAGATTACGCTGCCGGCCATCGGCGACGTGATCGCTTCC
GGATTTACCCCCACAAAGCTCAGCGAAGACCTTGCAGAGAAGCTCGCCAAGGTGGTCAATAAGCCCATTGTTACGGTAAC
GGTCAATACTGTCACCAACAACAAGATCTATGTGTTCGGCGGCGGGGTTCCTTCCGGAGTGGCGGTTCTCCCCTCCCGTA
CAACGCTCCTTCAGTTCCTGATCCGCTATGGCAATTTCAAGGGGATCGATCTGGGGAACGCCTATCTGCTTCGCAACGGC
AAGAAGATGGATGTGGATTTCCATTCCCTGCTGGTCAAGGGAGATGTCGCCAAGGACGTTCCCCTCAAGCCTGAGGATAT
GATCTATATCCCCGACAATGAAGCCTACAAGATTTACGTGATGGGAGCCGTGGCCAATCCGAAGTATGTCTTCTACCGTG
ACGGTCTCCGGATTCTCGATGCAATAATCGAGACTGGCGGGTTCACCAAGTTCGCCAAGGAGAATGATGTTCTGATCGTC
CGTAAGGAAGGAACCAGCACAACGGAGATCAGCGCCAAGGTCAAGGATCTCATGAAGGAGGGAGACATGACCCAGAACGT
TCACCTCAAGCCCGGCGATTTTGTCATAGTCAAGGAAAGTATTTTTTAG

Upstream 100 bases:

>100_bases
TTACTACATCAAAAACATGTCGATGCTTCTCGATATCATAATCGTTCTAGAGACTATCAAAGTGGTCCTTTTCGGAAGAG
GAAGCAGATAAGGGGGGGAA

Downstream 100 bases:

>100_bases
CCTGGAGATCAACTAATGGTATCAAAGACGGAAGAGTTGAATAAATACCTGAAAATGCTCATGAAGAGGAGGTATCTCTT
TATTGTGGTATCTCTTGTGG

Product: polysaccharide export protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MERLQRMLKFSCGFIAVVLVVTMLSGTSAMASEGSDGDYVVGDGDSLMISVWGEKELSGTVTVRPDGKITLPAIGDVIAS
GFTPTKLSEDLAEKLAKVVNKPIVTVTVNTVTNNKIYVFGGGVPSGVAVLPSRTTLLQFLIRYGNFKGIDLGNAYLLRNG
KKMDVDFHSLLVKGDVAKDVPLKPEDMIYIPDNEAYKIYVMGAVANPKYVFYRDGLRILDAIIETGGFTKFAKENDVLIV
RKEGTSTTEISAKVKDLMKEGDMTQNVHLKPGDFVIVKESIF

Sequences:

>Translated_282_residues
MERLQRMLKFSCGFIAVVLVVTMLSGTSAMASEGSDGDYVVGDGDSLMISVWGEKELSGTVTVRPDGKITLPAIGDVIAS
GFTPTKLSEDLAEKLAKVVNKPIVTVTVNTVTNNKIYVFGGGVPSGVAVLPSRTTLLQFLIRYGNFKGIDLGNAYLLRNG
KKMDVDFHSLLVKGDVAKDVPLKPEDMIYIPDNEAYKIYVMGAVANPKYVFYRDGLRILDAIIETGGFTKFAKENDVLIV
RKEGTSTTEISAKVKDLMKEGDMTQNVHLKPGDFVIVKESIF
>Mature_282_residues
MERLQRMLKFSCGFIAVVLVVTMLSGTSAMASEGSDGDYVVGDGDSLMISVWGEKELSGTVTVRPDGKITLPAIGDVIAS
GFTPTKLSEDLAEKLAKVVNKPIVTVTVNTVTNNKIYVFGGGVPSGVAVLPSRTTLLQFLIRYGNFKGIDLGNAYLLRNG
KKMDVDFHSLLVKGDVAKDVPLKPEDMIYIPDNEAYKIYVMGAVANPKYVFYRDGLRILDAIIETGGFTKFAKENDVLIV
RKEGTSTTEISAKVKDLMKEGDMTQNVHLKPGDFVIVKESIF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=236, Percent_Identity=26.6949152542373, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788376, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 30670; Mature: 30670

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLQRMLKFSCGFIAVVLVVTMLSGTSAMASEGSDGDYVVGDGDSLMISVWGEKELSGT
CHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCCEEEECCCEEEEEEECCCCCCCE
VTVRPDGKITLPAIGDVIASGFTPTKLSEDLAEKLAKVVNKPIVTVTVNTVTNNKIYVFG
EEECCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEE
GGVPSGVAVLPSRTTLLQFLIRYGNFKGIDLGNAYLLRNGKKMDVDFHSLLVKGDVAKDV
CCCCCCEEECCCHHHHHHHHHHHCCCCCEECCCEEEEECCCEECCCHHHEEEECCCCCCC
PLKPEDMIYIPDNEAYKIYVMGAVANPKYVFYRDGLRILDAIIETGGFTKFAKENDVLIV
CCCCCCEEEECCCCEEEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCEEECCCCCEEEE
RKEGTSTTEISAKVKDLMKEGDMTQNVHLKPGDFVIVKESIF
EECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCC
>Mature Secondary Structure
MERLQRMLKFSCGFIAVVLVVTMLSGTSAMASEGSDGDYVVGDGDSLMISVWGEKELSGT
CHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCCEEEECCCEEEEEEECCCCCCCE
VTVRPDGKITLPAIGDVIASGFTPTKLSEDLAEKLAKVVNKPIVTVTVNTVTNNKIYVFG
EEECCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEE
GGVPSGVAVLPSRTTLLQFLIRYGNFKGIDLGNAYLLRNGKKMDVDFHSLLVKGDVAKDV
CCCCCCEEECCCHHHHHHHHHHHCCCCCEECCCEEEEECCCEECCCHHHEEEECCCCCCC
PLKPEDMIYIPDNEAYKIYVMGAVANPKYVFYRDGLRILDAIIETGGFTKFAKENDVLIV
CCCCCCEEEECCCCEEEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCEEECCCCCEEEE
RKEGTSTTEISAKVKDLMKEGDMTQNVHLKPGDFVIVKESIF
EECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]