Click here to switch to the map view.

The map label for this gene is 78223164

Identifier: 78223164

GI number: 78223164

Start: 2182661

End: 2183464

Strand: Reverse

Name: 78223164

Synonym: Gmet_1957

Alternate gene names: NA

Gene position: 2183464-2182661 (Counterclockwise)

Preceding gene: 78223165

Following gene: 78223160

Centisome position: 54.62

GC content: 58.71

Gene sequence:

>804_bases
ATGACACGCCAACCCGCAGTTGCCGGACAGTTCTACACCGATGAGCCGAAACGGTTGCGGGGGGATCTCCAGCGGATGAT
CCCTGCCGAGACCATGAAGCAGCGAGTTAAGGGTATCGTGGCCCCCCACGCAGGCTATGTTTATTCCGGTCACGTTGCAG
GTGCCGTGTACGGCGCCATCGAGATACCGTCGACCGTTGTCATCCTCGGCCCCAATCACCACGGTTTCGGGGCCGCCGCA
GCCCTGTATCCCGAAGGAGAATGGCTCACGCCCCTTGGCTCCGTCCCCATTGACGTTCGCCTCTCTCAGCTTGTGCAGAA
GCATGTCCCGCTCGTGGAGCCAGAGATGTCGGCCCACCGGTTCGAACACTCCCTCGAAGTTCAGGTGCCTTTTCTCCAGT
ATTGTCGCGCTGACGTTTCTATTGTGCCGATCTGCCTCGGATTCGGTGATTATGAGCGGTGCAGGCTTCTGGGGGAGGGG
ATTGCAAGGGCGATCAGGGAGTTCGGCGAAGATGTCCTCATCGTGGCGAGTTCTGACATGACCCACTATGAGTCAGCTGA
CGCCGCCCGGGCAAAGGACGAGCAAGCTATTGCCGAGGTACTGGCGCTGAATCCGGAGGGACTGGTGCAGATCTGTCGTC
GCAAAAACATCACCATGTGCGGGGTTATTCCCGCAACGGTCATGCTGGTGACAGCCAAGGCTTTGGGGGCTAGCAAGGCA
GAATTGATCAGTTACGCAACAAGCGGAGATGTAACGGGGGACAACCGGCAGGTGGTTGCTTATGCTGCAATGGCGGTGTA
TTAG

Upstream 100 bases:

>100_bases
GAGCAGCCCGAGGATGACAGGGAGCTTTTGTAAGGCACTGTCGTCTGAGTGAATCTCTGCTATAGTTAGTGCTGATGGTT
TGTCGAACGAGGGGGTGCGG

Downstream 100 bases:

>100_bases
GGGGTGGGCTTGAAAACAAAGCTCTTTCCTGTCCCCGGCCCCATTTTTATCACTCTTCCTTCTCTATTCTCACGACCTGG
AGTACGCCGGGCATCCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTRQPAVAGQFYTDEPKRLRGDLQRMIPAETMKQRVKGIVAPHAGYVYSGHVAGAVYGAIEIPSTVVILGPNHHGFGAAA
ALYPEGEWLTPLGSVPIDVRLSQLVQKHVPLVEPEMSAHRFEHSLEVQVPFLQYCRADVSIVPICLGFGDYERCRLLGEG
IARAIREFGEDVLIVASSDMTHYESADAARAKDEQAIAEVLALNPEGLVQICRRKNITMCGVIPATVMLVTAKALGASKA
ELISYATSGDVTGDNRQVVAYAAMAVY

Sequences:

>Translated_267_residues
MTRQPAVAGQFYTDEPKRLRGDLQRMIPAETMKQRVKGIVAPHAGYVYSGHVAGAVYGAIEIPSTVVILGPNHHGFGAAA
ALYPEGEWLTPLGSVPIDVRLSQLVQKHVPLVEPEMSAHRFEHSLEVQVPFLQYCRADVSIVPICLGFGDYERCRLLGEG
IARAIREFGEDVLIVASSDMTHYESADAARAKDEQAIAEVLALNPEGLVQICRRKNITMCGVIPATVMLVTAKALGASKA
ELISYATSGDVTGDNRQVVAYAAMAVY
>Mature_266_residues
TRQPAVAGQFYTDEPKRLRGDLQRMIPAETMKQRVKGIVAPHAGYVYSGHVAGAVYGAIEIPSTVVILGPNHHGFGAAAA
LYPEGEWLTPLGSVPIDVRLSQLVQKHVPLVEPEMSAHRFEHSLEVQVPFLQYCRADVSIVPICLGFGDYERCRLLGEGI
ARAIREFGEDVLIVASSDMTHYESADAARAKDEQAIAEVLALNPEGLVQICRRKNITMCGVIPATVMLVTAKALGASKAE
LISYATSGDVTGDNRQVVAYAAMAVY

Specific function: Unknown

COG id: COG1355

COG function: function code R; Predicted dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family [H]

Homologues:

Organism=Homo sapiens, GI7705720, Length=289, Percent_Identity=23.8754325259516, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI25146594, Length=262, Percent_Identity=24.0458015267176, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32566861, Length=262, Percent_Identity=24.0458015267176, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322467, Length=205, Percent_Identity=28.2926829268293, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357419, Length=287, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020619
- InterPro:   IPR002737 [H]

Pfam domain/function: PF01875 Memo [H]

EC number: NA

Molecular weight: Translated: 28861; Mature: 28729

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQPAVAGQFYTDEPKRLRGDLQRMIPAETMKQRVKGIVAPHAGYVYSGHVAGAVYGAI
CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHHHEEEE
EIPSTVVILGPNHHGFGAAAALYPEGEWLTPLGSVPIDVRLSQLVQKHVPLVEPEMSAHR
ECCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
FEHSLEVQVPFLQYCRADVSIVPICLGFGDYERCRLLGEGIARAIREFGEDVLIVASSDM
HCCCEEEEECHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
THYESADAARAKDEQAIAEVLALNPEGLVQICRRKNITMCGVIPATVMLVTAKALGASKA
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCHH
ELISYATSGDVTGDNRQVVAYAAMAVY
HHHEECCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
TRQPAVAGQFYTDEPKRLRGDLQRMIPAETMKQRVKGIVAPHAGYVYSGHVAGAVYGAI
CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHHHEEEE
EIPSTVVILGPNHHGFGAAAALYPEGEWLTPLGSVPIDVRLSQLVQKHVPLVEPEMSAHR
ECCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
FEHSLEVQVPFLQYCRADVSIVPICLGFGDYERCRLLGEGIARAIREFGEDVLIVASSDM
HCCCEEEEECHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
THYESADAARAKDEQAIAEVLALNPEGLVQICRRKNITMCGVIPATVMLVTAKALGASKA
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCHH
ELISYATSGDVTGDNRQVVAYAAMAVY
HHHEECCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]