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The map label for this gene is cydB [H]

Identifier: 78223136

GI number: 78223136

Start: 2154276

End: 2155304

Strand: Reverse

Name: cydB [H]

Synonym: Gmet_1929

Alternate gene names: 78223136

Gene position: 2155304-2154276 (Counterclockwise)

Preceding gene: 78223137

Following gene: 78223133

Centisome position: 53.92

GC content: 60.16

Gene sequence:

>1029_bases
ATGGAACTGCAGATTATCTGGTTCGTGCTCTGGGGAGTTCTCTGGGCGGTCTACTTCATGCTCGACGGATTCGTCTTCGG
CACCGGAATCCTCCACAATGTGCTGCCCCGCACCGACGGCGAGAAGCGGGTCCTCATCAATACCATCGGTCCGGTGTGGG
ACGGTAACGAAGTCTGGCTCATCACCGCGGGCGGCGCCACCTTCGCGGCATTTCCCACCACCTATGCGCTCATGTTCAGT
TACCTCTACACGGCGCTGCTGCTCCTGCTCTTCTCGCTGATAGTTCGCGGGGTATCGTTCGAGTTTCGCGGCAAGCTTGA
AGGGGAGGGGTGGAAAAAGGCGTGGGACGTGGCGATCCAGGTATCCAGCTTCCTGCCGGCGCTCCTTTTCGGCGTGGCCT
TCGGCAACATCTTCAAGGGGCTTCCCATGGACGCCGCCGGCTATCAGGGGTCGTTTCTGTCGCTCCTCAACCCCTATGGG
CTTCTGACCGGCGTCCTGTTCGTGCTCCTCTTCACGGTTCACGGTGCCCTCTGGCTGTCGGTGAAGACCGTGGGCGACCT
GAGAGCCCGGGCCAAGGGGGTTGCCGACAAGACCTGGCCGGCCCTGCTGGTGGTGGCGGTAGCGTTTCTTGCCTACACGA
AGTTCGCCACCAAGCTTTTCGACAATTACCTGGCTCATCCGCTGCTCTTTGTGGTTCCGCTTGTGGCCGTTGCGGCTCTC
ATCGGGATGCGGCTCTTCTCGGCCAGGGGGGCGATGCTCACCGCCTTCGCATCGTCCTGCGTGACGGTGCTTGCCGTGGT
GGCAACAGGCGTTGCGGGGCTCTTCCCGAACCTTATTCCGTCGAGCCTCGACCCGGCCTACAGCCTCACCATCTTCAATT
CATCATCGAGCCCATACACCCTGAAGATCATGACCGTCGTGGCATTCATCTTTGTACCGATCGTCATTGCCTACAAGATA
TGGGTTTACCGGATATTCAGGGCTCCCGTCACCGAAGCGGAGGTACTGGAGGACAAGCACGCTTACTGA

Upstream 100 bases:

>100_bases
GGTGCCATCGATATCTATCTCCTGGCAAAGTACGCCCGCAAGGGGCCTGACGACGATCTTTCCGGCATCATCAAACCGGC
GACGGTAAGGGAGGCATAAC

Downstream 100 bases:

>100_bases
CCCGCCTTTCTCCAAACGCGTATGAAATTGAAAGAGCCCGTAATTACGGGCTCTCTTTTTTTGCTCACTACCGACATACC
GGCAGCCGACTCATTCCCGT

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MELQIIWFVLWGVLWAVYFMLDGFVFGTGILHNVLPRTDGEKRVLINTIGPVWDGNEVWLITAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVSFEFRGKLEGEGWKKAWDVAIQVSSFLPALLFGVAFGNIFKGLPMDAAGYQGSFLSLLNPYG
LLTGVLFVLLFTVHGALWLSVKTVGDLRARAKGVADKTWPALLVVAVAFLAYTKFATKLFDNYLAHPLLFVVPLVAVAAL
IGMRLFSARGAMLTAFASSCVTVLAVVATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTVVAFIFVPIVIAYKI
WVYRIFRAPVTEAEVLEDKHAY

Sequences:

>Translated_342_residues
MELQIIWFVLWGVLWAVYFMLDGFVFGTGILHNVLPRTDGEKRVLINTIGPVWDGNEVWLITAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVSFEFRGKLEGEGWKKAWDVAIQVSSFLPALLFGVAFGNIFKGLPMDAAGYQGSFLSLLNPYG
LLTGVLFVLLFTVHGALWLSVKTVGDLRARAKGVADKTWPALLVVAVAFLAYTKFATKLFDNYLAHPLLFVVPLVAVAAL
IGMRLFSARGAMLTAFASSCVTVLAVVATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTVVAFIFVPIVIAYKI
WVYRIFRAPVTEAEVLEDKHAY
>Mature_342_residues
MELQIIWFVLWGVLWAVYFMLDGFVFGTGILHNVLPRTDGEKRVLINTIGPVWDGNEVWLITAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVSFEFRGKLEGEGWKKAWDVAIQVSSFLPALLFGVAFGNIFKGLPMDAAGYQGSFLSLLNPYG
LLTGVLFVLLFTVHGALWLSVKTVGDLRARAKGVADKTWPALLVVAVAFLAYTKFATKLFDNYLAHPLLFVVPLVAVAAL
IGMRLFSARGAMLTAFASSCVTVLAVVATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTVVAFIFVPIVIAYKI
WVYRIFRAPVTEAEVLEDKHAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=374, Percent_Identity=35.8288770053476, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787213, Length=374, Percent_Identity=34.7593582887701, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37453; Mature: 37453

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQIIWFVLWGVLWAVYFMLDGFVFGTGILHNVLPRTDGEKRVLINTIGPVWDGNEVWL
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE
ITAGGATFAAFPTTYALMFSYLYTALLLLLFSLIVRGVSFEFRGKLEGEGWKKAWDVAIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH
VSSFLPALLFGVAFGNIFKGLPMDAAGYQGSFLSLLNPYGLLTGVLFVLLFTVHGALWLS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VKTVGDLRARAKGVADKTWPALLVVAVAFLAYTKFATKLFDNYLAHPLLFVVPLVAVAAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGMRLFSARGAMLTAFASSCVTVLAVVATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYT
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEE
LKIMTVVAFIFVPIVIAYKIWVYRIFRAPVTEAEVLEDKHAY
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure
MELQIIWFVLWGVLWAVYFMLDGFVFGTGILHNVLPRTDGEKRVLINTIGPVWDGNEVWL
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE
ITAGGATFAAFPTTYALMFSYLYTALLLLLFSLIVRGVSFEFRGKLEGEGWKKAWDVAIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH
VSSFLPALLFGVAFGNIFKGLPMDAAGYQGSFLSLLNPYGLLTGVLFVLLFTVHGALWLS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VKTVGDLRARAKGVADKTWPALLVVAVAFLAYTKFATKLFDNYLAHPLLFVVPLVAVAAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGMRLFSARGAMLTAFASSCVTVLAVVATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYT
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEE
LKIMTVVAFIFVPIVIAYKIWVYRIFRAPVTEAEVLEDKHAY
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]