| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is phsA [H]
Identifier: 78223017
GI number: 78223017
Start: 2024896
End: 2027088
Strand: Direct
Name: phsA [H]
Synonym: Gmet_1810
Alternate gene names: 78223017
Gene position: 2024896-2027088 (Clockwise)
Preceding gene: 78223016
Following gene: 78223018
Centisome position: 50.66
GC content: 61.38
Gene sequence:
>2193_bases ATGAAACGGAGAACGTTTTTACAGCTTGGTACAGTAATAGCTGCCGGCGCCGTACTGGATGGATGCCGGTCAAAAAATGA GCAGCTCATCCCCTATCTCATTCCGCCGGATGAGGGGATAACTCCCGGCAAAGGTACTTATTATGCCAGCTCCTGCAATG CATGTCCTGCCGGCTGCGGCATCCTAGTCCGAGTGTCCGAGGGACGGGCAAAGAAGATTGAGGGAAACCCGGAACATCCC ATCAATAGAGGGAAACTCTGCGCCCGGGGGCAGGCCGTTGTTCAGGAACTTTACCATCCCGACCGCGTGCCTCATCCCCT CAAACGGAATGGCCCCCGTGGTTCCGGTGCCTTCACGCGGATTTCCTGGCAAGAGGGTATTGGGCTGCTCACGGATAGGC TCAAAGCTTTGCAGCGGGAACAGAGCACTAATGGCCTGGCTCTGCTGACGCCTCATTTGCGGGGTACCCTGGCGGAACTC ACGGGTCGCTTCATGCGCACGTTCGGCTCGACCAACCACGTCTCCTATGAGTTGCTCACCCCCGACTTGCTTCGGATTGC TGCCCGTCGTAGCTTCGGGCAGCCTACCCTTCCCTATTACGACATCGCCGAAACGCGCTATCTGCTCAGTTTCGGGGCTG ATTTTGTGGACTCTCACCTGTCGCCGGTCAAGTATGGTTCCGCCTTTGGTGAGATGCGCCAGGGCCGTGACACGGTTCGC GGGCATTTCACCTATGTGGGGGGGCGCATGTCACTGACTGCCGCCTCGGCCGACCGCTGGATGCCTGCCAAGCCGGGGAG CGAAGGAACCCTGGCCCTTGGCATTGCACGCCTGATTCTGGCCGAGTCGCTTTACGACAGCGGAGCACTCGCGATGAACG GGCTTGAGGCAAAGAAACTGCTGGCCGCGCTGGACAGATACGATCTCCCCCGAGTGGCGCAGCTCTCCGGTCTGCCGCAA GGAGCGATCGCTGAGGTGGCACGGGAGTTTGCCTCGACCCGTCCCGCACTCGCTCTGGCCGGGGAGATGGTTGCCTTTCA GAGCAACGGCCCTGAATCGGTCCGTGCGGTCCACCTGCTCAATCTCCTGGTGGGAAGCCTGAATCGGCCGGGTGGGATCT ACCCCGATGCAGGGTCCCCATCCGGACCGGAAAATTCCTTTGCCGAACTCATCGCTCTTATCGAGACGATGCGCGGCGGC CACGTGAAGGTGGCCATGATTCATGGCGATCCGCTCTATTCCGTTCCTCCGGCGACTGGGTTTCACGACGCACTGGCAAA GGTTCCGTTCATCGTCAGCTTTTCCTCGCTGCTCGACGATACCGCCCTGCACGCGGACTTGGTCCTTCCGGACCACGCCG CCCTGGAAAGCTGGGGAGACGTGATACCGGTCGCCGGCACCCGGGAACCGCTGGTGGGGCTTATGCAGCCGGTTGTGGAG CCTTTGTTCGATACCCGCCAGTTCCCCGAAGTGTTGCTGGCTACTGCCCATGAGCTGGGAGGCCGGATGGCTGCAGCATT ACCGGACGAGTCGTACCTGGAGTTGCTGAAGGGAGCGGTCAGGAAGCAAGCCGGATTTGGGGCCGGCGTGGATTTCGAAG CGGCGTGGGTCGACCTGCTTCAGCACGGAGGGCTCTTTAAAACCAAGAGTGTCCAGCCCACCGGTTATCGATGGTCCTCG GACGCACCACCGCCATTGCCCGAGGACCCGGACTTTGCCGGGGACCAGAAGACGTACCCATTCCATCTGATTGCCTACCC TGCCACCGCCTTTTATGACGGCCGCGGTGCACCGTATCCCTGGCTGCAGCAACTCCCGGACCCGATGACCACCGTCGTTT GGGGAAGTTGGGTGGAGATCAACCCCGAGACCGCAGCCGAGCACGGGATCGGCTTTGGCGATCTGGTGGAGGTCTCATCG CCCCAGGGCACACTCCGTCTGCCGGCCGTCGTTTATCCCGGAATCCGTCCGGACATGGTGGCGATCCCCTTGGGGCAGGG GCATCGGGGGATGGGACGCTATGCCCAGGGGCAAGGGGTAAATCCTCTCGCGCTGGTGGCACGGCAAGGGACGAAACAGC AGCCTGCCTGGAATGCTACCCGGGTGCGGATAACCAGAATCTCAGGGAATGGGGAACTGGTTACGGCAGGACATCCCCAG GGAAGCCTCCGGAGCGAGTTGGTCGAGATATAG
Upstream 100 bases:
>100_bases ACCCGGACCGCAAGCCTCAAGATGGGATGGTGCCTGAACTGCCACCATCAGCATAAGGCCAGTATCGACTGCTGGACGTG TCACAAGTAGCGGAGCGCAA
Downstream 100 bases:
>100_bases GGAAGCCGCGCAAGCGGTCATCGGGATTGAGTCGATTATGGAAACAATGACGAGTCAGTACAGATGGGGGATGGTTGTCG ACCTTGATCGGTGCACCGGC
Product: molybdopterin oxidoreductase Fe4S4 region
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MKRRTFLQLGTVIAAGAVLDGCRSKNEQLIPYLIPPDEGITPGKGTYYASSCNACPAGCGILVRVSEGRAKKIEGNPEHP INRGKLCARGQAVVQELYHPDRVPHPLKRNGPRGSGAFTRISWQEGIGLLTDRLKALQREQSTNGLALLTPHLRGTLAEL TGRFMRTFGSTNHVSYELLTPDLLRIAARRSFGQPTLPYYDIAETRYLLSFGADFVDSHLSPVKYGSAFGEMRQGRDTVR GHFTYVGGRMSLTAASADRWMPAKPGSEGTLALGIARLILAESLYDSGALAMNGLEAKKLLAALDRYDLPRVAQLSGLPQ GAIAEVAREFASTRPALALAGEMVAFQSNGPESVRAVHLLNLLVGSLNRPGGIYPDAGSPSGPENSFAELIALIETMRGG HVKVAMIHGDPLYSVPPATGFHDALAKVPFIVSFSSLLDDTALHADLVLPDHAALESWGDVIPVAGTREPLVGLMQPVVE PLFDTRQFPEVLLATAHELGGRMAAALPDESYLELLKGAVRKQAGFGAGVDFEAAWVDLLQHGGLFKTKSVQPTGYRWSS DAPPPLPEDPDFAGDQKTYPFHLIAYPATAFYDGRGAPYPWLQQLPDPMTTVVWGSWVEINPETAAEHGIGFGDLVEVSS PQGTLRLPAVVYPGIRPDMVAIPLGQGHRGMGRYAQGQGVNPLALVARQGTKQQPAWNATRVRITRISGNGELVTAGHPQ GSLRSELVEI
Sequences:
>Translated_730_residues MKRRTFLQLGTVIAAGAVLDGCRSKNEQLIPYLIPPDEGITPGKGTYYASSCNACPAGCGILVRVSEGRAKKIEGNPEHP INRGKLCARGQAVVQELYHPDRVPHPLKRNGPRGSGAFTRISWQEGIGLLTDRLKALQREQSTNGLALLTPHLRGTLAEL TGRFMRTFGSTNHVSYELLTPDLLRIAARRSFGQPTLPYYDIAETRYLLSFGADFVDSHLSPVKYGSAFGEMRQGRDTVR GHFTYVGGRMSLTAASADRWMPAKPGSEGTLALGIARLILAESLYDSGALAMNGLEAKKLLAALDRYDLPRVAQLSGLPQ GAIAEVAREFASTRPALALAGEMVAFQSNGPESVRAVHLLNLLVGSLNRPGGIYPDAGSPSGPENSFAELIALIETMRGG HVKVAMIHGDPLYSVPPATGFHDALAKVPFIVSFSSLLDDTALHADLVLPDHAALESWGDVIPVAGTREPLVGLMQPVVE PLFDTRQFPEVLLATAHELGGRMAAALPDESYLELLKGAVRKQAGFGAGVDFEAAWVDLLQHGGLFKTKSVQPTGYRWSS DAPPPLPEDPDFAGDQKTYPFHLIAYPATAFYDGRGAPYPWLQQLPDPMTTVVWGSWVEINPETAAEHGIGFGDLVEVSS PQGTLRLPAVVYPGIRPDMVAIPLGQGHRGMGRYAQGQGVNPLALVARQGTKQQPAWNATRVRITRISGNGELVTAGHPQ GSLRSELVEI >Mature_730_residues MKRRTFLQLGTVIAAGAVLDGCRSKNEQLIPYLIPPDEGITPGKGTYYASSCNACPAGCGILVRVSEGRAKKIEGNPEHP INRGKLCARGQAVVQELYHPDRVPHPLKRNGPRGSGAFTRISWQEGIGLLTDRLKALQREQSTNGLALLTPHLRGTLAEL TGRFMRTFGSTNHVSYELLTPDLLRIAARRSFGQPTLPYYDIAETRYLLSFGADFVDSHLSPVKYGSAFGEMRQGRDTVR GHFTYVGGRMSLTAASADRWMPAKPGSEGTLALGIARLILAESLYDSGALAMNGLEAKKLLAALDRYDLPRVAQLSGLPQ GAIAEVAREFASTRPALALAGEMVAFQSNGPESVRAVHLLNLLVGSLNRPGGIYPDAGSPSGPENSFAELIALIETMRGG HVKVAMIHGDPLYSVPPATGFHDALAKVPFIVSFSSLLDDTALHADLVLPDHAALESWGDVIPVAGTREPLVGLMQPVVE PLFDTRQFPEVLLATAHELGGRMAAALPDESYLELLKGAVRKQAGFGAGVDFEAAWVDLLQHGGLFKTKSVQPTGYRWSS DAPPPLPEDPDFAGDQKTYPFHLIAYPATAFYDGRGAPYPWLQQLPDPMTTVVWGSWVEINPETAAEHGIGFGDLVEVSS PQGTLRLPAVVYPGIRPDMVAIPLGQGHRGMGRYAQGQGVNPLALVARQGTKQQPAWNATRVRITRISGNGELVTAGHPQ GSLRSELVEI
Specific function: Oxidoreductase which produces hydrogen sulfide from thiosulfate (Potential) [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=743, Percent_Identity=23.4185733512786, Blast_Score=137, Evalue=3e-33, Organism=Escherichia coli, GI171474008, Length=735, Percent_Identity=23.6734693877551, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI87081797, Length=734, Percent_Identity=23.9782016348774, Blast_Score=123, Evalue=5e-29, Organism=Escherichia coli, GI1788534, Length=396, Percent_Identity=21.7171717171717, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI3868719, Length=256, Percent_Identity=25.390625, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI3868720, Length=406, Percent_Identity=23.3990147783251, Blast_Score=76, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 78470; Mature: 78470
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRTFLQLGTVIAAGAVLDGCRSKNEQLIPYLIPPDEGITPGKGTYYASSCNACPAGCG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCE ILVRVSEGRAKKIEGNPEHPINRGKLCARGQAVVQELYHPDRVPHPLKRNGPRGSGAFTR EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEE ISWQEGIGLLTDRLKALQREQSTNGLALLTPHLRGTLAELTGRFMRTFGSTNHVSYELLT EEHHHCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECC PDLLRIAARRSFGQPTLPYYDIAETRYLLSFGADFVDSHLSPVKYGSAFGEMRQGRDTVR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCHHHC GHFTYVGGRMSLTAASADRWMPAKPGSEGTLALGIARLILAESLYDSGALAMNGLEAKKL EEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCHHHHHH LAALDRYDLPRVAQLSGLPQGAIAEVAREFASTRPALALAGEMVAFQSNGPESVRAVHLL HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCEEEEECCCCHHHHHHHHH NLLVGSLNRPGGIYPDAGSPSGPENSFAELIALIETMRGGHVKVAMIHGDPLYSVPPATG HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC FHDALAKVPFIVSFSSLLDDTALHADLVLPDHAALESWGDVIPVAGTREPLVGLMQPVVE HHHHHHHCCHHEEHHHHHHHHHHHEEEECCCHHHHHHCCCEEECCCCHHHHHHHHHHHHH PLFDTRQFPEVLLATAHELGGRMAAALPDESYLELLKGAVRKQAGFGAGVDFEAAWVDLL HHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH QHGGLFKTKSVQPTGYRWSSDAPPPLPEDPDFAGDQKTYPFHLIAYPATAFYDGRGAPYP HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCH WLQQLPDPMTTVVWGSWVEINPETAAEHGIGFGDLVEVSSPQGTLRLPAVVYPGIRPDMV HHHHCCCCHHHHEECCEEEECCHHHHHHCCCCCCEEEECCCCCCEECCEEECCCCCCCEE AIPLGQGHRGMGRYAQGQGVNPLALVARQGTKQQPAWNATRVRITRISGNGELVTAGHPQ EEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCC GSLRSELVEI CHHHHHHHCC >Mature Secondary Structure MKRRTFLQLGTVIAAGAVLDGCRSKNEQLIPYLIPPDEGITPGKGTYYASSCNACPAGCG CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCE ILVRVSEGRAKKIEGNPEHPINRGKLCARGQAVVQELYHPDRVPHPLKRNGPRGSGAFTR EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEE ISWQEGIGLLTDRLKALQREQSTNGLALLTPHLRGTLAELTGRFMRTFGSTNHVSYELLT EEHHHCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEECC PDLLRIAARRSFGQPTLPYYDIAETRYLLSFGADFVDSHLSPVKYGSAFGEMRQGRDTVR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCHHHC GHFTYVGGRMSLTAASADRWMPAKPGSEGTLALGIARLILAESLYDSGALAMNGLEAKKL EEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCHHHHHH LAALDRYDLPRVAQLSGLPQGAIAEVAREFASTRPALALAGEMVAFQSNGPESVRAVHLL HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCEEEEECCCCHHHHHHHHH NLLVGSLNRPGGIYPDAGSPSGPENSFAELIALIETMRGGHVKVAMIHGDPLYSVPPATG HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC FHDALAKVPFIVSFSSLLDDTALHADLVLPDHAALESWGDVIPVAGTREPLVGLMQPVVE HHHHHHHCCHHEEHHHHHHHHHHHEEEECCCHHHHHHCCCEEECCCCHHHHHHHHHHHHH PLFDTRQFPEVLLATAHELGGRMAAALPDESYLELLKGAVRKQAGFGAGVDFEAAWVDLL HHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH QHGGLFKTKSVQPTGYRWSSDAPPPLPEDPDFAGDQKTYPFHLIAYPATAFYDGRGAPYP HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCH WLQQLPDPMTTVVWGSWVEINPETAAEHGIGFGDLVEVSSPQGTLRLPAVVYPGIRPDMV HHHHCCCCHHHHEECCEEEECCHHHHHHCCCCCCEEEECCCCCCEECCEEECCCCCCCEE AIPLGQGHRGMGRYAQGQGVNPLALVARQGTKQQPAWNATRVRITRISGNGELVTAGHPQ EEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCC GSLRSELVEI CHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751291; 11677609; 7737516 [H]