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The map label for this gene is intR [C]

Identifier: 78222992

GI number: 78222992

Start: 1999547

End: 2000905

Strand: Reverse

Name: intR [C]

Synonym: Gmet_1783

Alternate gene names: 78222992

Gene position: 2000905-1999547 (Counterclockwise)

Preceding gene: 78222993

Following gene: 78222991

Centisome position: 50.05

GC content: 56.07

Gene sequence:

>1359_bases
ATGAAGCGCACAACCCACCATGAAGCATTGCTCTTTGACAACGAGGAGAAGAAACAGGGAACCATCATCCGAAAGCCCGG
CTCCAGGAAGCTCTATATCCTCTTCTACTACTTCAACCGCCGGGTGGAGAAGACAACCGGCTTAACCGACACCAAGAAGA
ACCGGGAGAAGGTCCGGCTCTGGCTGGATCGGATCATCGAACGCCGGGACGCGGGGAAGCTCATCTTTGCCGATGCCTTC
CCAGGGGCACCGGAAGCGGAGAAGGCTTACTTTTCCAAGCTGGAGGGGTGGCAGTATGCCCCAGAACCGCGGGACATCCT
CTTTGGGTCGTACCTCCAGGAGTGGTACACAAACGTCTGGAGCCATTACCCGGAGGGGACGAAGAAGGACGACTACCGAC
TGATTATCGACTATTGGCTGGTGCCGTTCTTTGGGGAGATGACCTTCTTCCAGATCAGCGGGGTGGAGATTCAGAAGTTC
ATTGCCTCCCTCAAGTGGAAGAAGGGGGCCAAGAAGGGGCAACCCCTCTCGAAAGCCAGGGCGAAGAACATCCTGATACC
GCTTCGCACCATCTGGAACGATGCCTGCGACCAATACCGCTGGGTGCTGCACAACCCCTTCACCAACTTGAAAAAGCACC
TTCCCAAGACGCAACCGAAACGGCGGGAAGGGTTCCGTTTCGATGAGTGGCGGGACTTCCTGGAACACATCGATCCCTGG
TATCAGCCGGTAGTGGAGTTGATGATCCTCACGGGGATGATCAATTCGGAAATGGCGGGACTCAGAAGAAGCGACATCCG
CCCCGACCACATCCTGGTTCAGCACACCATCGTTCGGGGCAAAGAACACGACACCCCGAAGACCATCTACCGGATCAGGA
AGATTCCCATCACCCAGGCGATCAGAAAACGCCTCGACATCCTCCAGCAAAGAAGCACCGGGGAATTGCTCGTCACCACG
AAAACCGGCACCATCTTTCGACCGGCAAACTTCCTCAAAGATGTTTGGACCAAGGCAGGGAAAGCCAGCGGCATTACCGA
CAAGGTGCCCTACTCCATGCGCCACTCCTTCGCGGCCTGGGCGCTTACCCTGCGGATCGATCCCAACCGCCTTGTCAGGC
TCATGGGACATGGATCAAAGAAGATGGTCTATGAGGTCTACGGGGATTACATCGACGGGCTGGAGGAGGACTTCTGGAAG
ATTCTGGAATACTTCGGCCGGGACTTCGTGGAGACAAAGGCAAAAAGGCCGCCCCACCTCCTGGGATACCCTGGGAATAT
CTACCCGATGGTTCCCGGCTCTTATCTCCAGCTAGAGCCTGAACAACAAAGCCCCGGCCTTCAGTTAAAACTCTCTTAG

Upstream 100 bases:

>100_bases
AACCCGATCAATTGGGAGTACTGAAATGAGCAGTGAAATGTGCTATGGTCAATCCCGGACTTTGACCGGTGGGGACGTGG
ATAGCGGAACGGAGACATCC

Downstream 100 bases:

>100_bases
TGAAAGTTTTGGTGAAAGTCGGGGCAACAAAAAAGGAATCCCGAAGGATTCCTTATTGTTAGATGGAGCGGGAAACGGGA
TTCGAACCCGCGACTTCAAC

Product: Phage integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase Family Protein; Integrase; Pore-Forming Cytotoxin Integrase; Integrative Genetic Element

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKRTTHHEALLFDNEEKKQGTIIRKPGSRKLYILFYYFNRRVEKTTGLTDTKKNREKVRLWLDRIIERRDAGKLIFADAF
PGAPEAEKAYFSKLEGWQYAPEPRDILFGSYLQEWYTNVWSHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGVEIQKF
IASLKWKKGAKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLPKTQPKRREGFRFDEWRDFLEHIDPW
YQPVVELMILTGMINSEMAGLRRSDIRPDHILVQHTIVRGKEHDTPKTIYRIRKIPITQAIRKRLDILQQRSTGELLVTT
KTGTIFRPANFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDPNRLVRLMGHGSKKMVYEVYGDYIDGLEEDFWK
ILEYFGRDFVETKAKRPPHLLGYPGNIYPMVPGSYLQLEPEQQSPGLQLKLS

Sequences:

>Translated_452_residues
MKRTTHHEALLFDNEEKKQGTIIRKPGSRKLYILFYYFNRRVEKTTGLTDTKKNREKVRLWLDRIIERRDAGKLIFADAF
PGAPEAEKAYFSKLEGWQYAPEPRDILFGSYLQEWYTNVWSHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGVEIQKF
IASLKWKKGAKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLPKTQPKRREGFRFDEWRDFLEHIDPW
YQPVVELMILTGMINSEMAGLRRSDIRPDHILVQHTIVRGKEHDTPKTIYRIRKIPITQAIRKRLDILQQRSTGELLVTT
KTGTIFRPANFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDPNRLVRLMGHGSKKMVYEVYGDYIDGLEEDFWK
ILEYFGRDFVETKAKRPPHLLGYPGNIYPMVPGSYLQLEPEQQSPGLQLKLS
>Mature_452_residues
MKRTTHHEALLFDNEEKKQGTIIRKPGSRKLYILFYYFNRRVEKTTGLTDTKKNREKVRLWLDRIIERRDAGKLIFADAF
PGAPEAEKAYFSKLEGWQYAPEPRDILFGSYLQEWYTNVWSHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGVEIQKF
IASLKWKKGAKKGQPLSKARAKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLPKTQPKRREGFRFDEWRDFLEHIDPW
YQPVVELMILTGMINSEMAGLRRSDIRPDHILVQHTIVRGKEHDTPKTIYRIRKIPITQAIRKRLDILQQRSTGELLVTT
KTGTIFRPANFLKDVWTKAGKASGITDKVPYSMRHSFAAWALTLRIDPNRLVRLMGHGSKKMVYEVYGDYIDGLEEDFWK
ILEYFGRDFVETKAKRPPHLLGYPGNIYPMVPGSYLQLEPEQQSPGLQLKLS

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome (By Similarity). [C]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53230; Mature: 53230

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTTHHEALLFDNEEKKQGTIIRKPGSRKLYILFYYFNRRVEKTTGLTDTKKNREKVRL
CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHCCCCCCHHHHHHHHH
WLDRIIERRDAGKLIFADAFPGAPEAEKAYFSKLEGWQYAPEPRDILFGSYLQEWYTNVW
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
SHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGVEIQKFIASLKWKKGAKKGQPLSKAR
HHCCCCCCCCCCEEEHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHH
AKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLPKTQPKRREGFRFDEWRDFLEHIDPW
HCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHCHH
YQPVVELMILTGMINSEMAGLRRSDIRPDHILVQHTIVRGKEHDTPKTIYRIRKIPITQA
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHCCCHHHH
IRKRLDILQQRSTGELLVTTKTGTIFRPANFLKDVWTKAGKASGITDKVPYSMRHSFAAW
HHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEE
ALTLRIDPNRLVRLMGHGSKKMVYEVYGDYIDGLEEDFWKILEYFGRDFVETKAKRPPHL
EEEEEECHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCE
LGYPGNIYPMVPGSYLQLEPEQQSPGLQLKLS
ECCCCCEEECCCCCEEEECCCCCCCCEEEEEC
>Mature Secondary Structure
MKRTTHHEALLFDNEEKKQGTIIRKPGSRKLYILFYYFNRRVEKTTGLTDTKKNREKVRL
CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHCCCCCCHHHHHHHHH
WLDRIIERRDAGKLIFADAFPGAPEAEKAYFSKLEGWQYAPEPRDILFGSYLQEWYTNVW
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
SHYPEGTKKDDYRLIIDYWLVPFFGEMTFFQISGVEIQKFIASLKWKKGAKKGQPLSKAR
HHCCCCCCCCCCEEEHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHH
AKNILIPLRTIWNDACDQYRWVLHNPFTNLKKHLPKTQPKRREGFRFDEWRDFLEHIDPW
HCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHCHH
YQPVVELMILTGMINSEMAGLRRSDIRPDHILVQHTIVRGKEHDTPKTIYRIRKIPITQA
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHCCCHHHH
IRKRLDILQQRSTGELLVTTKTGTIFRPANFLKDVWTKAGKASGITDKVPYSMRHSFAAW
HHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEE
ALTLRIDPNRLVRLMGHGSKKMVYEVYGDYIDGLEEDFWKILEYFGRDFVETKAKRPPHL
EEEEEECHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCE
LGYPGNIYPMVPGSYLQLEPEQQSPGLQLKLS
ECCCCCEEECCCCCEEEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA