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The map label for this gene is ycbK [H]

Identifier: 78222960

GI number: 78222960

Start: 1966494

End: 1967057

Strand: Reverse

Name: ycbK [H]

Synonym: Gmet_1751

Alternate gene names: 78222960

Gene position: 1967057-1966494 (Counterclockwise)

Preceding gene: 78222961

Following gene: 78222958

Centisome position: 49.21

GC content: 55.14

Gene sequence:

>564_bases
ATGGATTTCAAGATGTTAAACAGAAGAAACTTTCTAAAGGCCACCCTTACAGGAGCACTTACGCTCATGGGGGTGGGATC
GGCATTCGGACGTTTCGTGTCAACACCGGAACTCTTGCCCCCTGGACAGCTTTCCCTCTTCAACACTCATACCCGTGAAC
GAATTGCCCTGGCCTTCCGGGATGCAGCCGGAAATTACGATCTCGACTCCCTCAACACCCTCAACTGGATTCTCCGGTGC
CACTACACCAATGAAGTGACCGAGATGGACGTCAACACCCTTGAGTTCCTCAATCTCGTCGACAAGAAGTTTGGCGGCAA
CAACGAGATACACATCATCTCGGCCTACCGTTCGCCCCTCTACAATAACCTGCTGCGGGAGAACGGCCACGGAGTTGCCC
AGCATAGCCTCCACCTTGCCGGCAGGGCCATCGACATCTCCATTCCCGGCAAGAGCATCGCCAGCATTCGGGAGGCTGCC
GTCGACCTCCACATGGGCGGTGTCGGTTTCTACCCCAACTCGGGATTTGTTCACATCGACTCAGGCGCTTTCAGAACCTG
GTGA

Upstream 100 bases:

>100_bases
AGGCCGCAAGGGACCGAAACGGTTGACACACAAAACCCGTTTTTGGTACGAATAGGACTCCGTTTTCCCGCAGCACTCGA
ATAAAGGCAGGTAAAAATCA

Downstream 100 bases:

>100_bases
GTGGTATGGCGCCCCGCCATACCGTCAACGGCCTCCATTGCCCACGGCCGGATCAAGCTCGTAGTTGACGCTGAATCCCC
CCTCGCGCCGCACTATCTCC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDFKMLNRRNFLKATLTGALTLMGVGSAFGRFVSTPELLPPGQLSLFNTHTRERIALAFRDAAGNYDLDSLNTLNWILRC
HYTNEVTEMDVNTLEFLNLVDKKFGGNNEIHIISAYRSPLYNNLLRENGHGVAQHSLHLAGRAIDISIPGKSIASIREAA
VDLHMGGVGFYPNSGFVHIDSGAFRTW

Sequences:

>Translated_187_residues
MDFKMLNRRNFLKATLTGALTLMGVGSAFGRFVSTPELLPPGQLSLFNTHTRERIALAFRDAAGNYDLDSLNTLNWILRC
HYTNEVTEMDVNTLEFLNLVDKKFGGNNEIHIISAYRSPLYNNLLRENGHGVAQHSLHLAGRAIDISIPGKSIASIREAA
VDLHMGGVGFYPNSGFVHIDSGAFRTW
>Mature_187_residues
MDFKMLNRRNFLKATLTGALTLMGVGSAFGRFVSTPELLPPGQLSLFNTHTRERIALAFRDAAGNYDLDSLNTLNWILRC
HYTNEVTEMDVNTLEFLNLVDKKFGGNNEIHIISAYRSPLYNNLLRENGHGVAQHSLHLAGRAIDISIPGKSIASIREAA
VDLHMGGVGFYPNSGFVHIDSGAFRTW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=155, Percent_Identity=39.3548387096774, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20749; Mature: 20749

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKMLNRRNFLKATLTGALTLMGVGSAFGRFVSTPELLPPGQLSLFNTHTRERIALAFR
CCCCCCCCCHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCCEEEEECCCHHEEEEEEE
DAAGNYDLDSLNTLNWILRCHYTNEVTEMDVNTLEFLNLVDKKFGGNNEIHIISAYRSPL
CCCCCCCCCCHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCHH
YNNLLRENGHGVAQHSLHLAGRAIDISIPGKSIASIREAAVDLHMGGVGFYPNSGFVHID
HHHHHHHCCCCHHHHHEEECCEEEEEECCCHHHHHHHHHHHHEEECCEEECCCCCEEEEC
SGAFRTW
CCCCCCC
>Mature Secondary Structure
MDFKMLNRRNFLKATLTGALTLMGVGSAFGRFVSTPELLPPGQLSLFNTHTRERIALAFR
CCCCCCCCCHHHHHHHHHHHHEEECCHHHHHHCCCCCCCCCCCEEEEECCCHHEEEEEEE
DAAGNYDLDSLNTLNWILRCHYTNEVTEMDVNTLEFLNLVDKKFGGNNEIHIISAYRSPL
CCCCCCCCCCHHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCHH
YNNLLRENGHGVAQHSLHLAGRAIDISIPGKSIASIREAAVDLHMGGVGFYPNSGFVHID
HHHHHHHCCCCHHHHHEEECCEEEEEECCCHHHHHHHHHHHHEEECCEEECCCCCEEEEC
SGAFRTW
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]