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The map label for this gene is cspLA [H]

Identifier: 78222480

GI number: 78222480

Start: 1427204

End: 1427404

Strand: Reverse

Name: cspLA [H]

Synonym: Gmet_1266

Alternate gene names: 78222480

Gene position: 1427404-1427204 (Counterclockwise)

Preceding gene: 78222481

Following gene: 78222463

Centisome position: 35.71

GC content: 53.23

Gene sequence:

>201_bases
ATGGCACAGGGCAAGGTTAAGTGGTTCAACGACGCCAAAGGTTTCGGCTTCATTGAGCAGGAGAACGGGGAGGACGTGTT
TGTTCACTTCTCAGCCATCCAGTCCGACGGGTTCAAGACCCTTGCTGAAGGCGAAGCTGTCACCTTCGATGTGGTCACCG
GTCCCAAGGGACTCCAAGCAGCCAACGTAAAAAAAGCTTAA

Upstream 100 bases:

>100_bases
CATGCTTTGCGGTTTTCCTGCCCCAAGACTCCGGAAACTTTAGCAACATCCCACGAAGTTCCGGCACTGATCCGGAGGCA
CCAAAAAAGGAGGTAGGAAA

Downstream 100 bases:

>100_bases
TCGATTCATCCCCTAACAGACACGAAACCCCGCTGAATTATTCAGCGGGGTTTCGTTTTTTCAGACAAGCGCCTCATTGA
AATCTCAACTGTCGGCGAGA

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MAQGKVKWFNDAKGFGFIEQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPKGLQAANVKKA

Sequences:

>Translated_66_residues
MAQGKVKWFNDAKGFGFIEQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPKGLQAANVKKA
>Mature_65_residues
AQGKVKWFNDAKGFGFIEQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPKGLQAANVKKA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=66.1290322580645, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=57.8125, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=62.9032258064516, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=60.655737704918, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=60.655737704918, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=57.3770491803279, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7107; Mature: 6976

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGKVKWFNDAKGFGFIEQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPKGLQA
CCCCCEEEECCCCCCCEEECCCCCEEEEEEEEECCCCCEEECCCCEEEEEEEECCCCCCC
ANVKKA
CCCCCC
>Mature Secondary Structure 
AQGKVKWFNDAKGFGFIEQENGEDVFVHFSAIQSDGFKTLAEGEAVTFDVVTGPKGLQA
CCCCEEEECCCCCCCEEECCCCCEEEEEEEEECCCCCEEECCCCEEEEEEEECCCCCCC
ANVKKA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]