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The map label for this gene is lptF [H]

Identifier: 78222463

GI number: 78222463

Start: 1409319

End: 1410575

Strand: Reverse

Name: lptF [H]

Synonym: Gmet_1249

Alternate gene names: 78222463

Gene position: 1410575-1409319 (Counterclockwise)

Preceding gene: 78222480

Following gene: 78222462

Centisome position: 35.29

GC content: 54.18

Gene sequence:

>1257_bases
ATGAACAGACAATTGACAAGGGCAAACTGTGATGCACACCCCTCTGTTATTTACAACCCTCATACCTTCGTGTATCATCG
CGCCTCCATGACCAGCATTCTGTTCCGTTACATTTTCAAGGAAACCGCTGTTCCGTTCGTTCTCGGCATGGCGGTTTTTA
CCTTTGTACTTCTCATGGGGCGCCTGCTCAAACTGGCAGAGATGGTCTTCGCCAAGGGAGTGCCATTCCTCGACGTTTGC
CGACTCATCCTCTACATGCTTCCTTCCTTCTTGCTCGTTGCAATCCCCATGGCATTTCTGCTGGCGGTACTTCTTTCCTT
CGGCAGACTGTCCGCGGACAGCGAAGTAACAGCCATGAAGGCGGGGGGGGTTGGCCTCGGATCGCTGCTCACGCCAGTCT
TCACGTTCGCCGTCCTTGCCTATCTCGTCACGACGTTCATCACGGTCTTTGCACTCCCCTGGGGCAACACTTCCTTCAAG
CGATTTCTCTACGAGGTTATTGAGTCGCGGGCTGCCACAACCATCAAGGAAAAGGTATTTATCGACGATTTCCCCGGCTT
GGTTGTGTATATTGACGATTATGACCAGACGAGCCACCAGATATCGGGCATCCTGATCCATGACGAGCGCAACCCGGATG
AACCAATGACCATCTTCGCCTCAACCGGAATAATCGCGGCAGCTCCCGAAGAAAAAAACGTCCGACTTCACCTTGTGAAC
GGGAGCATTCATCGGGGGATAGATCCTGGCGGCTACCGTCTTGTTGAGTTCCGCAGCTACGACCTCCATGTGGACCTGCG
CCAGAACGCGAAAAAAAACCAGTTCGACGAACAGGATATGACCCTCAAGCAACTTATTGCCAGTCGCGGGAACCGACAGA
ACAACGAAAAGTTCCGCCGCGATGTCTCGATTGAGCTTCATAAACGGTTTGCGCTCCCCTTTGCCTGCATCGTATTCGCA
ATGGTAGGCGTTCCGCTTGGCATCCAGAACCAGCGGTCGGGAAGAGCAGGAGGTTTTTCAGCGGGCATCATCATCCTCAT
GCTGTACTACGTGGTCATGTCCGCCGGCAAGACCATTGCGGAGAAGGAAATTCTTCCCATCCCGCTTGCTGTCTGGCTCC
CCAATGTCTTCTTTACCGCCTTTGGCGTTTATCTGCTGAGGCTCGCGGCGACTGAACGGCCCTTTCCTCTGATAGAGAGA
GGGCGAACGCTTATCGGAGAGGCGCGGGAGTGGCTCCACCGGAGGAAGGCTGCGTGA

Upstream 100 bases:

>100_bases
GTTGTGCCTCCGCTTCCCCGACAGCCGGAACCCGCATCAGACGCGGACACCACCGGCCGGACAGAAAGCGTGCGAATTAG
AAACCGAACTCGTATAGCAC

Downstream 100 bases:

>100_bases
GCATCCTGACTCGTTACATAGCCTCCGCCTATTTGCGGGTTTTCTGGCTCTGCCTTGCATCATTCATAGCCATCTACCTG
GTGATTGATTTTCTGGAAAA

Product: permease YjgP/YjgQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MNRQLTRANCDAHPSVIYNPHTFVYHRASMTSILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVC
RLILYMLPSFLLVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGNTSFK
RFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHDERNPDEPMTIFASTGIIAAAPEEKNVRLHLVN
GSIHRGIDPGGYRLVEFRSYDLHVDLRQNAKKNQFDEQDMTLKQLIASRGNRQNNEKFRRDVSIELHKRFALPFACIVFA
MVGVPLGIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLLRLAATERPFPLIER
GRTLIGEAREWLHRRKAA

Sequences:

>Translated_418_residues
MNRQLTRANCDAHPSVIYNPHTFVYHRASMTSILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVC
RLILYMLPSFLLVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGNTSFK
RFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHDERNPDEPMTIFASTGIIAAAPEEKNVRLHLVN
GSIHRGIDPGGYRLVEFRSYDLHVDLRQNAKKNQFDEQDMTLKQLIASRGNRQNNEKFRRDVSIELHKRFALPFACIVFA
MVGVPLGIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLLRLAATERPFPLIER
GRTLIGEAREWLHRRKAA
>Mature_418_residues
MNRQLTRANCDAHPSVIYNPHTFVYHRASMTSILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVC
RLILYMLPSFLLVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGNTSFK
RFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHDERNPDEPMTIFASTGIIAAAPEEKNVRLHLVN
GSIHRGIDPGGYRLVEFRSYDLHVDLRQNAKKNQFDEQDMTLKQLIASRGNRQNNEKFRRDVSIELHKRFALPFACIVFA
MVGVPLGIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLLRLAATERPFPLIER
GRTLIGEAREWLHRRKAA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 46990; Mature: 46990

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRQLTRANCDAHPSVIYNPHTFVYHRASMTSILFRYIFKETAVPFVLGMAVFTFVLLMG
CCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLKLAEMVFAKGVPFLDVCRLILYMLPSFLLVAIPMAFLLAVLLSFGRLSADSEVTAMK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
AGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGNTSFKRFLYEVIESRAATTIKEKVF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
IDDFPGLVVYIDDYDQTSHQISGILIHDERNPDEPMTIFASTGIIAAAPEEKNVRLHLVN
EECCCCEEEEEECCCCCCHHEEEEEEECCCCCCCCEEEEEECCEEEECCCCCCCEEEEEC
GSIHRGIDPGGYRLVEFRSYDLHVDLRQNAKKNQFDEQDMTLKQLIASRGNRQNNEKFRR
CHHHCCCCCCCEEEEEEECCEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
DVSIELHKRFALPFACIVFAMVGVPLGIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
EKEILPIPLAVWLPNVFFTAFGVYLLRLAATERPFPLIERGRTLIGEAREWLHRRKAA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRQLTRANCDAHPSVIYNPHTFVYHRASMTSILFRYIFKETAVPFVLGMAVFTFVLLMG
CCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLKLAEMVFAKGVPFLDVCRLILYMLPSFLLVAIPMAFLLAVLLSFGRLSADSEVTAMK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
AGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGNTSFKRFLYEVIESRAATTIKEKVF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
IDDFPGLVVYIDDYDQTSHQISGILIHDERNPDEPMTIFASTGIIAAAPEEKNVRLHLVN
EECCCCEEEEEECCCCCCHHEEEEEEECCCCCCCCEEEEEECCEEEECCCCCCCEEEEEC
GSIHRGIDPGGYRLVEFRSYDLHVDLRQNAKKNQFDEQDMTLKQLIASRGNRQNNEKFRR
CHHHCCCCCCCEEEEEEECCEEEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
DVSIELHKRFALPFACIVFAMVGVPLGIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
EKEILPIPLAVWLPNVFFTAFGVYLLRLAATERPFPLIERGRTLIGEAREWLHRRKAA
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]