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The map label for this gene is yjcF [C]

Identifier: 78222416

GI number: 78222416

Start: 1348163

End: 1349710

Strand: Reverse

Name: yjcF [C]

Synonym: Gmet_1201

Alternate gene names: 78222416

Gene position: 1349710-1348163 (Counterclockwise)

Preceding gene: 78222417

Following gene: 78222415

Centisome position: 33.76

GC content: 54.26

Gene sequence:

>1548_bases
ATGAATCCGTCCAATCCAGCATTTTCAGGCGACACTGAGCATCTCAGCGTCCTGCTAAGGGCAGTTGAACAGTGCGACAT
ATCAATCTGGAACAACTGGAGAACGACCAATCCAGCAATACGCCCCGCCCTGACAGGTGCTACCCTTGAAGGAGCAGTTC
TGTTCGATGCGAATCTGGCAGAGTCAAACATCGGGAACGCAAATCTTCGCAACTGCCGGATGATGGGGACCAATCTGCGG
GGCGCCATCCTTGCCGGCACTGATTTGGACGGTGCCAACCTTTTCGGTGCAAACTGCCAGGGAGCAAATTTCTGCAACAG
CAGTCTTCGGGGAGTAACCCTTCGCTGCGGCATGCAAGGGTGCATTCTCGAAGGTGCGAACCTTGAGCGCGCCGATATGA
TCGGGACCGATTTCACCGGTGCACGACTGGCAGGAGCATCGTTCCGAAATGCTGAAGCCTTTGGCGCCCGGTTCCGGAAC
GCGATCCTCACAGGTGCTGACCTATCAGGAATCAACTTGGGCACTGCAGACCTGTTCAAGGCAGAGTGCAACGAAGCGGT
GTTTTCCGATGCCAGCCTCCTCAGCGCAACGTTTAGCGAGGCGAGCCTCCGCCATGCATCCTTCTGCCGGGCAGACCTCT
CAAATTCCTATCTCAATAGCGCAACACTCATCGCCGCCGATCTCAGCGGAGCTAAACTTGCTTTCGCGAACCTCATGGAA
GCCGATTTGCGCGACGCTATCTTCCGAGGAACGAATCTCCAGGGGGCTGTGCTCATGAATGCGAAACTGACTGGGGCCGA
CCTTCGCAACGTCAACATGAGTCTATCTAACCTCACAATGGCCGATCTTGCGGAGGCCAACCTCACCAATGCAAATCTGA
CGGGCGCCCTAATGGTCGGCACCGATCTGAGACGCGCCACCCTCAGGGGATGCTTGGTCTTCGGGATTTCACCGTGGGAG
GTACTCGCGGAGGATGCCGACCAACAGGATCTGGTAGTCACTAAGTTGAACCACCCGCAGGTTACGGTAGACGACATCGA
GATGGCCCAGTTTATCTATTTGCTTCTCAATAACGCCAAGGTACGCCGAGCTGTAGACACTATAACCTCGAAGATTGTAC
TCATCCTCGGCCGTTTCTCTCCAGAGCGAAAATCGGTGCTCGATGCCGTGCGAGATCAGCTTAGAGCCTGCAACTACGTA
CCTGTACTCTTTGACTTCAATCGGCCAGAGTCCCTCGATGAAGTGGAAACCGTTACACTCCTTGCACGGATGGCCAGATT
CATTATTGCCGACCTGACGGAGCCTCACTGCGTTCCCGATGAACTACGCTCAATCGTTCCCGATGTAGAAGTGCCTGTTC
TGCCAATAATCGAAGGAGATAACCCCTACGGAACATTTGGAACTCTCCGCAAATATCCGTGGGTGCTGGACATACATCGA
TATCGGGGCATTGAAGACCTGCTTGCCTCCTTTGACGAATCGGTCGTCGTCCCTGCCGAGAACATGACTCGGGAAATTGG
AAAGCGTAAAGCACTTCGAAATAATTGA

Upstream 100 bases:

>100_bases
CTCATTTCAGTTCGTTTCCTTGAAGCGGTGCCAGACAGCCCTATACTGTTAGCAGCGAACGAGTTCGAAACCCGCAGTTC
CTCCCCCCGAGGGAAACAAC

Downstream 100 bases:

>100_bases
ACAAATAATAGCTCCACGGAGGGAAATACCATGGCCGAAGATAAATCCACCATCAAACTCCGCATCCCCGGCACGGAAAT
CACGGGACCGCTCCCCCCCG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MNPSNPAFSGDTEHLSVLLRAVEQCDISIWNNWRTTNPAIRPALTGATLEGAVLFDANLAESNIGNANLRNCRMMGTNLR
GAILAGTDLDGANLFGANCQGANFCNSSLRGVTLRCGMQGCILEGANLERADMIGTDFTGARLAGASFRNAEAFGARFRN
AILTGADLSGINLGTADLFKAECNEAVFSDASLLSATFSEASLRHASFCRADLSNSYLNSATLIAADLSGAKLAFANLME
ADLRDAIFRGTNLQGAVLMNAKLTGADLRNVNMSLSNLTMADLAEANLTNANLTGALMVGTDLRRATLRGCLVFGISPWE
VLAEDADQQDLVVTKLNHPQVTVDDIEMAQFIYLLLNNAKVRRAVDTITSKIVLILGRFSPERKSVLDAVRDQLRACNYV
PVLFDFNRPESLDEVETVTLLARMARFIIADLTEPHCVPDELRSIVPDVEVPVLPIIEGDNPYGTFGTLRKYPWVLDIHR
YRGIEDLLASFDESVVVPAENMTREIGKRKALRNN

Sequences:

>Translated_515_residues
MNPSNPAFSGDTEHLSVLLRAVEQCDISIWNNWRTTNPAIRPALTGATLEGAVLFDANLAESNIGNANLRNCRMMGTNLR
GAILAGTDLDGANLFGANCQGANFCNSSLRGVTLRCGMQGCILEGANLERADMIGTDFTGARLAGASFRNAEAFGARFRN
AILTGADLSGINLGTADLFKAECNEAVFSDASLLSATFSEASLRHASFCRADLSNSYLNSATLIAADLSGAKLAFANLME
ADLRDAIFRGTNLQGAVLMNAKLTGADLRNVNMSLSNLTMADLAEANLTNANLTGALMVGTDLRRATLRGCLVFGISPWE
VLAEDADQQDLVVTKLNHPQVTVDDIEMAQFIYLLLNNAKVRRAVDTITSKIVLILGRFSPERKSVLDAVRDQLRACNYV
PVLFDFNRPESLDEVETVTLLARMARFIIADLTEPHCVPDELRSIVPDVEVPVLPIIEGDNPYGTFGTLRKYPWVLDIHR
YRGIEDLLASFDESVVVPAENMTREIGKRKALRNN
>Mature_515_residues
MNPSNPAFSGDTEHLSVLLRAVEQCDISIWNNWRTTNPAIRPALTGATLEGAVLFDANLAESNIGNANLRNCRMMGTNLR
GAILAGTDLDGANLFGANCQGANFCNSSLRGVTLRCGMQGCILEGANLERADMIGTDFTGARLAGASFRNAEAFGARFRN
AILTGADLSGINLGTADLFKAECNEAVFSDASLLSATFSEASLRHASFCRADLSNSYLNSATLIAADLSGAKLAFANLME
ADLRDAIFRGTNLQGAVLMNAKLTGADLRNVNMSLSNLTMADLAEANLTNANLTGALMVGTDLRRATLRGCLVFGISPWE
VLAEDADQQDLVVTKLNHPQVTVDDIEMAQFIYLLLNNAKVRRAVDTITSKIVLILGRFSPERKSVLDAVRDQLRACNYV
PVLFDFNRPESLDEVETVTLLARMARFIIADLTEPHCVPDELRSIVPDVEVPVLPIIEGDNPYGTFGTLRKYPWVLDIHR
YRGIEDLLASFDESVVVPAENMTREIGKRKALRNN

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=157, Percent_Identity=35.031847133758, Blast_Score=70, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221377802, Length=155, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 55867; Mature: 55867

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSNPAFSGDTEHLSVLLRAVEQCDISIWNNWRTTNPAIRPALTGATLEGAVLFDANLA
CCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEECCCCCCCEEEEECCCC
ESNIGNANLRNCRMMGTNLRGAILAGTDLDGANLFGANCQGANFCNSSLRGVTLRCGMQG
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCE
CILEGANLERADMIGTDFTGARLAGASFRNAEAFGARFRNAILTGADLSGINLGTADLFK
EEEECCCCCHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHH
AECNEAVFSDASLLSATFSEASLRHASFCRADLSNSYLNSATLIAADLSGAKLAFANLME
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
ADLRDAIFRGTNLQGAVLMNAKLTGADLRNVNMSLSNLTMADLAEANLTNANLTGALMVG
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHCHHHHHHHCCCCCCCCCEEEEEC
TDLRRATLRGCLVFGISPWEVLAEDADQQDLVVTKLNHPQVTVDDIEMAQFIYLLLNNAK
CHHHHHHHCEEEEECCCHHHHHHCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCH
VRRAVDTITSKIVLILGRFSPERKSVLDAVRDQLRACNYVPVLFDFNRPESLDEVETVTL
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
LARMARFIIADLTEPHCVPDELRSIVPDVEVPVLPIIEGDNPYGTFGTLRKYPWVLDIHR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHCCEEEEHHH
YRGIEDLLASFDESVVVPAENMTREIGKRKALRNN
HCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPSNPAFSGDTEHLSVLLRAVEQCDISIWNNWRTTNPAIRPALTGATLEGAVLFDANLA
CCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEECCCCCCCEEEEECCCC
ESNIGNANLRNCRMMGTNLRGAILAGTDLDGANLFGANCQGANFCNSSLRGVTLRCGMQG
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCE
CILEGANLERADMIGTDFTGARLAGASFRNAEAFGARFRNAILTGADLSGINLGTADLFK
EEEECCCCCHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHH
AECNEAVFSDASLLSATFSEASLRHASFCRADLSNSYLNSATLIAADLSGAKLAFANLME
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
ADLRDAIFRGTNLQGAVLMNAKLTGADLRNVNMSLSNLTMADLAEANLTNANLTGALMVG
HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHCHHHHHHHCCCCCCCCCEEEEEC
TDLRRATLRGCLVFGISPWEVLAEDADQQDLVVTKLNHPQVTVDDIEMAQFIYLLLNNAK
CHHHHHHHCEEEEECCCHHHHHHCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHCCCH
VRRAVDTITSKIVLILGRFSPERKSVLDAVRDQLRACNYVPVLFDFNRPESLDEVETVTL
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
LARMARFIIADLTEPHCVPDELRSIVPDVEVPVLPIIEGDNPYGTFGTLRKYPWVLDIHR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHCCEEEEHHH
YRGIEDLLASFDESVVVPAENMTREIGKRKALRNN
HCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]