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The map label for this gene is rbcR [H]

Identifier: 78222302

GI number: 78222302

Start: 1208627

End: 1209520

Strand: Reverse

Name: rbcR [H]

Synonym: Gmet_1084

Alternate gene names: 78222302

Gene position: 1209520-1208627 (Counterclockwise)

Preceding gene: 78222305

Following gene: 78222301

Centisome position: 30.26

GC content: 66.55

Gene sequence:

>894_bases
ATGAACCTCAAGCAGCTGGAAGTTTTCCTTGCCGTGGCCGAAAGCGGCAGCTTCTCCCGGGGAGCCGAGGCCACGTTCAT
TACCCAATCGACGGTGAGCCAGCATATCGCGGCCCTGGAAAATGAACTGGGGGTAAAACTCCTGGACCGCACGGGGCGTG
GGGCGCTCCTGACCGAGGGGGGAAAGCTCCTTCTGGAGCACGCCCGCAGGGTGGTGGCGGGCGCCCGCGAGATCGAGCCG
GCCATGCGGCGCTTCCGGGGGGTGGAAGAGGCGGAACTTCGCGTGGGGGGAAGCAACATTCCGGGCGACCACATGATCCC
GGAGATCCTGCCCCTCTTCCTTGCGCGGCATCCCGGTGTCCGCCTGACGCTTCTCCAGGGGGACAGCCGGGAGATTCTGG
ACAAGGTGGCGCGGGAAGAGGTGGAGATCGGCATCATCGGGAGCCGTTTCGACGACGAGGGGTTCGCCTTCACCCCCCTG
GGGCGAGACGAAATCAGGCTCATCGCCGGCAGCGCCCACCCCCTGGCCGGCAGAGGACCCGTCGGTATCGACGTCCTAGC
CCGCCAGGAGTTCATCATGCGCGAACCGGGCTCCGGCACGGCCCGGACCATCGCGCACGCCCTGGCCGGCGCCGGCGTCG
CGCCGGCCACCCTTGCCGTGCGGGCGAGCCTTGGGAGCAACGAGGCGGTCAAGCATGCCGTGGCCAGCGGATTGGGAGTA
TCGTTTCTGTCGGAAATCTCGGTGAGAAAGGAACTGGGACGCGGCGAACTCGTGGAGATTCCAGTCGACGGGCTGAAGAT
TTCCCGCACTTTCTACCTTGTGCAGCGGGACGGGCGGGAGCTTTCCCCGGCGGCCCGCGCCTTTGCCGACCTGATGAGGG
AACAGTACCGCTAA

Upstream 100 bases:

>100_bases
TTCTGGTAAAGTATTGCGTATTTGACAGAACAAGGTCAAATTGATAATTTTGATAAACTAAATAGTTCATATCGTAAATA
CCGATAACAGGAGAACCCCC

Downstream 100 bases:

>100_bases
ACTGCCGACGCGGGTACCCTCCCCCCGAATCGCCCCTTCTCCTTTGGTATCCCTCTTGCAATCATTTCACAGTTTTCATC
CATTCTCTGTTATCGAGGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNLKQLEVFLAVAESGSFSRGAEATFITQSTVSQHIAALENELGVKLLDRTGRGALLTEGGKLLLEHARRVVAGAREIEP
AMRRFRGVEEAELRVGGSNIPGDHMIPEILPLFLARHPGVRLTLLQGDSREILDKVAREEVEIGIIGSRFDDEGFAFTPL
GRDEIRLIAGSAHPLAGRGPVGIDVLARQEFIMREPGSGTARTIAHALAGAGVAPATLAVRASLGSNEAVKHAVASGLGV
SFLSEISVRKELGRGELVEIPVDGLKISRTFYLVQRDGRELSPAARAFADLMREQYR

Sequences:

>Translated_297_residues
MNLKQLEVFLAVAESGSFSRGAEATFITQSTVSQHIAALENELGVKLLDRTGRGALLTEGGKLLLEHARRVVAGAREIEP
AMRRFRGVEEAELRVGGSNIPGDHMIPEILPLFLARHPGVRLTLLQGDSREILDKVAREEVEIGIIGSRFDDEGFAFTPL
GRDEIRLIAGSAHPLAGRGPVGIDVLARQEFIMREPGSGTARTIAHALAGAGVAPATLAVRASLGSNEAVKHAVASGLGV
SFLSEISVRKELGRGELVEIPVDGLKISRTFYLVQRDGRELSPAARAFADLMREQYR
>Mature_297_residues
MNLKQLEVFLAVAESGSFSRGAEATFITQSTVSQHIAALENELGVKLLDRTGRGALLTEGGKLLLEHARRVVAGAREIEP
AMRRFRGVEEAELRVGGSNIPGDHMIPEILPLFLARHPGVRLTLLQGDSREILDKVAREEVEIGIIGSRFDDEGFAFTPL
GRDEIRLIAGSAHPLAGRGPVGIDVLARQEFIMREPGSGTARTIAHALAGAGVAPATLAVRASLGSNEAVKHAVASGLGV
SFLSEISVRKELGRGELVEIPVDGLKISRTFYLVQRDGRELSPAARAFADLMREQYR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=33.7931034482759, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=28.6689419795222, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI87082132, Length=303, Percent_Identity=28.7128712871287, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI157672245, Length=216, Percent_Identity=31.0185185185185, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=28.5223367697594, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=29.5302013422819, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=27.7027027027027, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=29.4354838709677, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=25.8620689655172, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=26.510067114094, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=31.1023622047244, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=23.1075697211155, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=175, Percent_Identity=29.7142857142857, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790262, Length=288, Percent_Identity=23.2638888888889, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=25.8687258687259, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=31.2, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=298, Percent_Identity=21.1409395973154, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=250, Percent_Identity=27.2, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693193, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082024, Length=264, Percent_Identity=25.7575757575758, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=25.7462686567164, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=280, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=271, Percent_Identity=25.830258302583, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=301, Percent_Identity=22.9235880398671, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787949, Length=283, Percent_Identity=24.7349823321555, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787806, Length=296, Percent_Identity=24.3243243243243, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31938; Mature: 31938

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKQLEVFLAVAESGSFSRGAEATFITQSTVSQHIAALENELGVKLLDRTGRGALLTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCEEEECCCCCCCEEECC
GKLLLEHARRVVAGAREIEPAMRRFRGVEEAELRVGGSNIPGDHMIPEILPLFLARHPGV
CHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCHHHHHHHHHHHCCCCC
RLTLLQGDSREILDKVAREEVEIGIIGSRFDDEGFAFTPLGRDEIRLIAGSAHPLAGRGP
EEEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCCCC
VGIDVLARQEFIMREPGSGTARTIAHALAGAGVAPATLAVRASLGSNEAVKHAVASGLGV
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHEEEECCCCCHHHHHHHHHCCHH
SFLSEISVRKELGRGELVEIPVDGLKISRTFYLVQRDGRELSPAARAFADLMREQYR
HHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLKQLEVFLAVAESGSFSRGAEATFITQSTVSQHIAALENELGVKLLDRTGRGALLTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCEEEECCCCCCCEEECC
GKLLLEHARRVVAGAREIEPAMRRFRGVEEAELRVGGSNIPGDHMIPEILPLFLARHPGV
CHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCHHHHHHHHHHHCCCCC
RLTLLQGDSREILDKVAREEVEIGIIGSRFDDEGFAFTPLGRDEIRLIAGSAHPLAGRGP
EEEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCCCC
VGIDVLARQEFIMREPGSGTARTIAHALAGAGVAPATLAVRASLGSNEAVKHAVASGLGV
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHEEEECCCCCHHHHHHHHHCCHH
SFLSEISVRKELGRGELVEIPVDGLKISRTFYLVQRDGRELSPAARAFADLMREQYR
HHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA