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The map label for this gene is ybcL [C]

Identifier: 78222229

GI number: 78222229

Start: 1123657

End: 1124187

Strand: Reverse

Name: ybcL [C]

Synonym: Gmet_1009

Alternate gene names: 78222229

Gene position: 1124187-1123657 (Counterclockwise)

Preceding gene: 78222249

Following gene: 78222227

Centisome position: 28.12

GC content: 63.47

Gene sequence:

>531_bases
ATGGGTAAGCGTATCATGCCGTGGCTGCTGGCAGGCTTGTTCATGGCACCGCCGGCAGCGATCGGAAAGGAGGCACGCAC
CATGAGTGAACTGCAGATTTCGAGTCCGGCATTCACCCACAAGGGAGCGATCCCGGCCCGTTTCACCTGCGACGGGCAGG
ACATCAACCCGTCCCTGGCGTTCGGCAACATCCCGGCCGGCACCAAATCCCTTGCTCTCATCGTCGACGACCCGGACGCG
CCGGTGGGAATGTGGGTCCACTGGGTGATGTGGAACATCCCCCCTGAAACGAGGGAGATCAGGGAGAACAGTGTCCCCGC
CGACGCCATCCAGGGGCTCAATGACTGGAAGAAAAACCGCTACGGCGGCCCCTGCCCCCCGTCGGGGACCCACCGCTACT
TCTTCAAGCTCTACGCCCTCGACTCGAAACTCACCCTGGCGCCGGCCACCACCAAAACCGCGCTGGAACGAGCCATGACG
GGGCACATCCTGGCGCGGGGAGAGCTGATGGGGACCTATCGCAGGCACTAA

Upstream 100 bases:

>100_bases
AACATCAACGCCTCCCGCCCAGCAACGCACTGGAGTTGGCAGGGCTGCCGGCCGGCAGCGGTATTTCGAACGGGGATGAA
GGCGTTCAGGAGGATCGGCA

Downstream 100 bases:

>100_bases
CCCTTCCCATCGAACTCCTCACCCTCGGCGACGAGCTTTCTCAGCTTCTTCGCGCCGGCCCGCTCCATGGGCTTGCCGGT
TATACTGCTCTTGGGGATAC

Product: PBP family phospholipid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGKRIMPWLLAGLFMAPPAAIGKEARTMSELQISSPAFTHKGAIPARFTCDGQDINPSLAFGNIPAGTKSLALIVDDPDA
PVGMWVHWVMWNIPPETREIRENSVPADAIQGLNDWKKNRYGGPCPPSGTHRYFFKLYALDSKLTLAPATTKTALERAMT
GHILARGELMGTYRRH

Sequences:

>Translated_176_residues
MGKRIMPWLLAGLFMAPPAAIGKEARTMSELQISSPAFTHKGAIPARFTCDGQDINPSLAFGNIPAGTKSLALIVDDPDA
PVGMWVHWVMWNIPPETREIRENSVPADAIQGLNDWKKNRYGGPCPPSGTHRYFFKLYALDSKLTLAPATTKTALERAMT
GHILARGELMGTYRRH
>Mature_175_residues
GKRIMPWLLAGLFMAPPAAIGKEARTMSELQISSPAFTHKGAIPARFTCDGQDINPSLAFGNIPAGTKSLALIVDDPDAP
VGMWVHWVMWNIPPETREIRENSVPADAIQGLNDWKKNRYGGPCPPSGTHRYFFKLYALDSKLTLAPATTKTALERAMTG
HILARGELMGTYRRH

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=138, Percent_Identity=36.231884057971, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786990, Length=99, Percent_Identity=43.4343434343434, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 19371; Mature: 19239

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRIMPWLLAGLFMAPPAAIGKEARTMSELQISSPAFTHKGAIPARFTCDGQDINPSLA
CCCCHHHHHHHHHHHCCCHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEE
FGNIPAGTKSLALIVDDPDAPVGMWVHWVMWNIPPETREIRENSVPADAIQGLNDWKKNR
ECCCCCCCCEEEEEECCCCCCHHHEEEEEEECCCCCHHHHHHCCCCHHHHHCHHHHHHCC
YGGPCPPSGTHRYFFKLYALDSKLTLAPATTKTALERAMTGHILARGELMGTYRRH
CCCCCCCCCCCEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHEECCHHHHHHCCC
>Mature Secondary Structure 
GKRIMPWLLAGLFMAPPAAIGKEARTMSELQISSPAFTHKGAIPARFTCDGQDINPSLA
CCCHHHHHHHHHHHCCCHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEE
FGNIPAGTKSLALIVDDPDAPVGMWVHWVMWNIPPETREIRENSVPADAIQGLNDWKKNR
ECCCCCCCCEEEEEECCCCCCHHHEEEEEEECCCCCHHHHHHCCCCHHHHHCHHHHHHCC
YGGPCPPSGTHRYFFKLYALDSKLTLAPATTKTALERAMTGHILARGELMGTYRRH
CCCCCCCCCCCEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]