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The map label for this gene is yciR [C]

Identifier: 78222165

GI number: 78222165

Start: 1048455

End: 1049372

Strand: Direct

Name: yciR [C]

Synonym: Gmet_0945

Alternate gene names: 78222165

Gene position: 1048455-1049372 (Clockwise)

Preceding gene: 78222164

Following gene: 78222166

Centisome position: 26.23

GC content: 60.13

Gene sequence:

>918_bases
ATGGGAACTAATCTGAGGATCATCGTCGTCACCAGCCCCAGCGGCGGGGACGGGAGCCTCGAACTGCGCCTCCAGAGCAA
GGGGTACCAGGTGGTCACCCTTGATAATCCTCCCAGTGTCATGGGGCTCATCTACTCCGACCCCCCCGACGTGGTGCTCA
TAGACCTGGCGACCCCCGACCAGACGCTTCTCGGCATCATCCACAGCCTGAAGGATGATTTCTTCTTCTCCACCATCCCG
GTCATAGGGATGATCCCCGAATGGGCTGCCGAAGGGTTCGACTGGGAGGAATATCCCCTCGACGATTTCGTCACTACCCC
ACTCAGTTACCGGGATCTCTTCACCCGGATTGTCCTGTCGCTGCGGCGCCTCAGGCGGGTCTTCGATAACAATCCCCTGA
CGAGGCTCCCCGGCAACACCTCCATCCAGCGCGCCATCGAGCATGCGGTGGGAAAGCCCATGGGGGTCTGTTACGTGGAC
ATCAACCACTTCAAACAGTACAATGACGTCTATGGCTTCGCCCACGGCGACGAGGTGATCCGGATGGTTGCCCGCATCAT
CGCCAATGCCGTCAAGGAGGCGGGTGAGGGGTTTGCGGGCCACATAGGCGGCGACGATTTCGTCTTCATCGTGCCCCTGG
AGCAGGCCGAGGCCGTGTCGGAGCGGATCATCGCCAACTTCACCGCCGTCGTTTCCGAGCTCTTCAACGAGGAGGAGAAG
GCGCGGGGATTCTACGTGGCCCACGACCGCAAGGGGAACGAGGAACGGGTGCCCCTCATGGGGGTCGCCATCTCCATTGT
TCCCATGGATTCGCCGAAGATCGGCCACTACGCCAAGGTGGCCGAGGTGGCGGCGGAACTGAAAAAGATGGCCAAGAAAT
CCCACAGAAGCTGTTATGTTATGGATCGGCGTAAATAG

Upstream 100 bases:

>100_bases
TGGCTCGGCATGGCCGAGGACGACCTTGCCGCCATTGTGGAAGAGCTTGAGGACCGGCTGGTGGAAGTCAAAAACTTCAG
CCTGGAGATACAGTCCGCCG

Downstream 100 bases:

>100_bases
CCATTTAACGCAGGACCATCCCATCCACACCACAGAAGGAGACCCACCCATGCTCCGCAAGGCCCAGATAGGTGACGTCA
AGAACATCCAGAAGCTCCTC

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL/GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain-Containing Protein; GGDEF Domain Protein; Signal Transduction Protein; Signaling Protein; Response Regulator Receiver Protein; Two-Component Response Regulator; Sensory Box/GGDEF Family Protein; Response Regulator Receiver; EAL Domain-Containing Protein; EAL Domain Proteni; Signal Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; EAL Domain/GGDEF Domain-Containing Protein; EAL Domain/GGDEF Domain Protein; Response Regulator/GGDEF Domain-Containing Protein; Two-Component System Response Regulator Receiver; Diguanylate Cyclase With PAS/PAC Sensor; Response Regulator; CheY-Like Response Regulator Modulated Diguanylate Cyclase; EAL Domain Protein; Diguanylate Phosphodiesterase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; Sensor Protein; EAL Domain-Containing; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Sensory Box Histidine Kinase/Response Regulator; Diguanylate Cyclase/Phosphodiesterase Family Protein; Ggdef Domain Protein; Eal/Ggdef Domain Protein

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MGTNLRIIVVTSPSGGDGSLELRLQSKGYQVVTLDNPPSVMGLIYSDPPDVVLIDLATPDQTLLGIIHSLKDDFFFSTIP
VIGMIPEWAAEGFDWEEYPLDDFVTTPLSYRDLFTRIVLSLRRLRRVFDNNPLTRLPGNTSIQRAIEHAVGKPMGVCYVD
INHFKQYNDVYGFAHGDEVIRMVARIIANAVKEAGEGFAGHIGGDDFVFIVPLEQAEAVSERIIANFTAVVSELFNEEEK
ARGFYVAHDRKGNEERVPLMGVAISIVPMDSPKIGHYAKVAEVAAELKKMAKKSHRSCYVMDRRK

Sequences:

>Translated_305_residues
MGTNLRIIVVTSPSGGDGSLELRLQSKGYQVVTLDNPPSVMGLIYSDPPDVVLIDLATPDQTLLGIIHSLKDDFFFSTIP
VIGMIPEWAAEGFDWEEYPLDDFVTTPLSYRDLFTRIVLSLRRLRRVFDNNPLTRLPGNTSIQRAIEHAVGKPMGVCYVD
INHFKQYNDVYGFAHGDEVIRMVARIIANAVKEAGEGFAGHIGGDDFVFIVPLEQAEAVSERIIANFTAVVSELFNEEEK
ARGFYVAHDRKGNEERVPLMGVAISIVPMDSPKIGHYAKVAEVAAELKKMAKKSHRSCYVMDRRK
>Mature_304_residues
GTNLRIIVVTSPSGGDGSLELRLQSKGYQVVTLDNPPSVMGLIYSDPPDVVLIDLATPDQTLLGIIHSLKDDFFFSTIPV
IGMIPEWAAEGFDWEEYPLDDFVTTPLSYRDLFTRIVLSLRRLRRVFDNNPLTRLPGNTSIQRAIEHAVGKPMGVCYVDI
NHFKQYNDVYGFAHGDEVIRMVARIIANAVKEAGEGFAGHIGGDDFVFIVPLEQAEAVSERIIANFTAVVSELFNEEEKA
RGFYVAHDRKGNEERVPLMGVAISIVPMDSPKIGHYAKVAEVAAELKKMAKKSHRSCYVMDRRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33970; Mature: 33839

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNLRIIVVTSPSGGDGSLELRLQSKGYQVVTLDNPPSVMGLIYSDPPDVVLIDLATPD
CCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
QTLLGIIHSLKDDFFFSTIPVIGMIPEWAAEGFDWEEYPLDDFVTTPLSYRDLFTRIVLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
LRRLRRVFDNNPLTRLPGNTSIQRAIEHAVGKPMGVCYVDINHFKQYNDVYGFAHGDEVI
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHH
RMVARIIANAVKEAGEGFAGHIGGDDFVFIVPLEQAEAVSERIIANFTAVVSELFNEEEK
HHHHHHHHHHHHHHCCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHH
ARGFYVAHDRKGNEERVPLMGVAISIVPMDSPKIGHYAKVAEVAAELKKMAKKSHRSCYV
HCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
MDRRK
EECCC
>Mature Secondary Structure 
GTNLRIIVVTSPSGGDGSLELRLQSKGYQVVTLDNPPSVMGLIYSDPPDVVLIDLATPD
CCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
QTLLGIIHSLKDDFFFSTIPVIGMIPEWAAEGFDWEEYPLDDFVTTPLSYRDLFTRIVLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
LRRLRRVFDNNPLTRLPGNTSIQRAIEHAVGKPMGVCYVDINHFKQYNDVYGFAHGDEVI
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHH
RMVARIIANAVKEAGEGFAGHIGGDDFVFIVPLEQAEAVSERIIANFTAVVSELFNEEEK
HHHHHHHHHHHHHHCCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHH
ARGFYVAHDRKGNEERVPLMGVAISIVPMDSPKIGHYAKVAEVAAELKKMAKKSHRSCYV
HCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
MDRRK
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA