Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 78222159

GI number: 78222159

Start: 1040745

End: 1042070

Strand: Reverse

Name: rarA [H]

Synonym: Gmet_0939

Alternate gene names: 78222159

Gene position: 1042070-1040745 (Counterclockwise)

Preceding gene: 78222160

Following gene: 78222158

Centisome position: 26.07

GC content: 62.59

Gene sequence:

>1326_bases
ATGACCGATCTTTTCGACGCCACCGCCGCAACCGAAACCGGCAGGGATGCCCCCCTGGCCGAACGGATGCGCCCCCGCAC
CCTCGACGACTACGTGGGCCAGGAGCACCTTCTGGGCGAAGGGAAACTCCTGCGTCGGCTCATCGAGTCCGACACCCTCT
CTTCCCTCATTTTCTGGGGTCCTCCCGGTTCGGGGAAAACGACCCTGGCCCGCATCATCGCCAACGCCACCAAGTCCCAC
TTCATCTTTTTTTCCGCCATCCTCTCCGGCGTGAAGGAGATCCGCGAAATCGTCAAGGAGGCGGAGAACGAGCGGAAGTA
CCGGGGTTCCAACACCATCCTCTTCGTTGACGAGATCCACCGGTTCAACAAATCCCAGCAGGACGCCTTCCTCCCCTACG
TGGAGAAAGGAGTCTTCACCATTATCGGCGCCACCACCGAAAACCCTTCGTTCGAGGTCATCGCGCCGCTCCTCTCCCGC
TGCAAGGTCCTGGTCCTCAACTCCCTGACCGATGAAGAGGTGACAACGATCCTGCGTCGTGCCCTTGTCGACCCGGAACG
GGGGCTTGGCAACCGGAGCCTTGCCGTTTCCGACGAGGCCCTCGCTTTCATGGCGGAGCAGGCCCAGGGGGACGCCCGGA
TCGCCCTCAACACCCTGGAAACGGCGGCGCGACTGGCGAAAAACGGCGAGATCGACCTGGACTCGGCCCGGGAAGCGGCC
CAGAAGAAGGCCCTGCTCTACGACAAGGGGGGTGAGGAGCACTACAACGTCATCTCCGCCTTCATTAAGTCCATGCGGGG
CAGCGACCCCGACGGCGCCCTCTACTGGCTGGCGCGGATGATCGAAGCGGGGGAAGACCCCCTCTTCATCCTGAGGCGGA
TGGTGATCCTCGCCTCCGAGGATATCGGCAATGCCGACCCGAGGGCGCTGCAAGTGGCGGTTGCAGCCCTTCAGGCGTTC
CAGCTTGTGGGGATGCCCGAAGGACGGATCATCATGGCCCAGGCGGTGACGTATCTCGCCACCGCACCCAAGTCCAACGC
CTCCTACGCGGGAATCGACGCGGCCCTGGCAGAGGTAAGGAAGAGCGGCGCCCTCCCCGTTCCCCTCCACATCCGCAACG
CCCCCACGCGGCTCATGAAGGATCTGGGATACCACGCGGGATACAAGTATGCCCACGACTACGAAGGGGGGCACGTCTCC
CAGGAGTATCTCCCTGAACAACTCCGGGGGAAGACCTTTTACGCCCCCCGCGGGCATGGCTACGAAAAGACGATCAAGGA
ACGGATGGAATATCTGCGGACTTTACAGGAGAGGAACAAGCAATGA

Upstream 100 bases:

>100_bases
AGTACGCCCGGGAGATCTGGGACGTGGAGCCCTTTGAAGTCCACCCGGTCCTGGAGTACCGCCAGCACGACGTGATACCC
GACTGAGCAGAATCAGACCG

Downstream 100 bases:

>100_bases
AAAAGATCGGCATTCTCACGAGCGGCGGCGACTGCTCCGGCATGAACGCCGCCATCCGGGCGGCGGTACGGACCGCGATC
CGCCTGAACATCGAGGTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MTDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWGPPGSGKTTLARIIANATKSH
FIFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSR
CKVLVLNSLTDEEVTTILRRALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLAKNGEIDLDSAREAA
QKKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQAF
QLVGMPEGRIIMAQAVTYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHAGYKYAHDYEGGHVS
QEYLPEQLRGKTFYAPRGHGYEKTIKERMEYLRTLQERNKQ

Sequences:

>Translated_441_residues
MTDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWGPPGSGKTTLARIIANATKSH
FIFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSR
CKVLVLNSLTDEEVTTILRRALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLAKNGEIDLDSAREAA
QKKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQAF
QLVGMPEGRIIMAQAVTYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHAGYKYAHDYEGGHVS
QEYLPEQLRGKTFYAPRGHGYEKTIKERMEYLRTLQERNKQ
>Mature_440_residues
TDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWGPPGSGKTTLARIIANATKSHF
IFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRC
KVLVLNSLTDEEVTTILRRALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLAKNGEIDLDSAREAAQ
KKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQAFQ
LVGMPEGRIIMAQAVTYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHAGYKYAHDYEGGHVSQ
EYLPEQLRGKTFYAPRGHGYEKTIKERMEYLRTLQERNKQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=50.1138952164009, Blast_Score=404, Evalue=1e-113,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=46.0136674259681, Blast_Score=350, Evalue=1e-96,
Organism=Homo sapiens, GI4506491, Length=240, Percent_Identity=25.8333333333333, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI31881687, Length=240, Percent_Identity=25.8333333333333, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI31563534, Length=278, Percent_Identity=26.6187050359712, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=50.2358490566038, Blast_Score=409, Evalue=1e-115,
Organism=Escherichia coli, GI1788167, Length=244, Percent_Identity=27.4590163934426, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554730, Length=298, Percent_Identity=25.1677852348993, Blast_Score=72, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=42.2535211267606, Blast_Score=319, Evalue=5e-88,
Organism=Saccharomyces cerevisiae, GI6324039, Length=270, Percent_Identity=24.4444444444444, Blast_Score=73, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48858; Mature: 48727

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWG
CCCCCCCHHHCCCCCCCCHHHHCCCCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHEEEEC
PPGSGKTTLARIIANATKSHFIFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
RFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNSLTDEEVTTILRR
HCCCCCCCCCCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLAKNGEIDLDSAREAA
HHCCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH
QKKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASE
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
DIGNADPRALQVAVAALQAFQLVGMPEGRIIMAQAVTYLATAPKSNASYAGIDAALAEVR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KSGALPVPLHIRNAPTRLMKDLGYHAGYKYAHDYEGGHVSQEYLPEQLRGKTFYAPRGHG
HCCCCCCEEEECCCHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCC
YEKTIKERMEYLRTLQERNKQ
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDLFDATAATETGRDAPLAERMRPRTLDDYVGQEHLLGEGKLLRRLIESDTLSSLIFWG
CCCCCCHHHCCCCCCCCHHHHCCCCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHEEEEC
PPGSGKTTLARIIANATKSHFIFFSAILSGVKEIREIVKEAENERKYRGSNTILFVDEIH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
RFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAPLLSRCKVLVLNSLTDEEVTTILRR
HCCCCCCCCCCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ALVDPERGLGNRSLAVSDEALAFMAEQAQGDARIALNTLETAARLAKNGEIDLDSAREAA
HHCCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH
QKKALLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASE
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
DIGNADPRALQVAVAALQAFQLVGMPEGRIIMAQAVTYLATAPKSNASYAGIDAALAEVR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KSGALPVPLHIRNAPTRLMKDLGYHAGYKYAHDYEGGHVSQEYLPEQLRGKTFYAPRGHG
HCCCCCCEEEECCCHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCC
YEKTIKERMEYLRTLQERNKQ
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]