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The map label for this gene is ihfB [H]

Identifier: 78222088

GI number: 78222088

Start: 958359

End: 958646

Strand: Direct

Name: ihfB [H]

Synonym: Gmet_0868

Alternate gene names: 78222088

Gene position: 958359-958646 (Clockwise)

Preceding gene: 78222087

Following gene: 78222089

Centisome position: 23.97

GC content: 54.51

Gene sequence:

>288_bases
ATGACGAAAAGTGAACTGGTAGAACAGTTGGCAGAGAAGAATACGTGGCTTACCCGCAAGGATTCGGAGATGATAGTGAA
CCTTGTCTTCGACAGCATCAGCGATGCGCTCAAGAGGGGCGAAAAGGTGGAGATTCGCGGCTTCGGCAGTTTTACCGTCC
GCGAGCGCGGCGCCCGCGAAGCGAGAAATCCCAAGAGTGGTGATGTTGTGAAGATCCCCGCCAAGAAAACGCCGTTCTTC
AAGACCGGCAAGGAACTTCGCGAGCGGGTCAACACCAAGGAAGAGTAG

Upstream 100 bases:

>100_bases
GAGCATGAGCCGACCGGGTAGGCAATCCCGGCGGAACTTCCGCAGGAGGGGGGCGGGCCGCTGGCCCGGCTCACGGAACC
TTGCAGCAAGGAGTGCATGA

Downstream 100 bases:

>100_bases
ATTTTCTTAGCCCGAATGGTGGAATTGGTAGACACAAGGGACTTAAAATCCCTCGACACTTAGTGTTGTGCCGGTTCGAC
CCCGGCTTCGGGCACCAATG

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGAREARNPKSGDVVKIPAKKTPFF
KTGKELRERVNTKEE

Sequences:

>Translated_95_residues
MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGAREARNPKSGDVVKIPAKKTPFF
KTGKELRERVNTKEE
>Mature_94_residues
TKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGAREARNPKSGDVVKIPAKKTPFFK
TGKELRERVNTKEE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=92, Evalue=8e-21,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=38.8888888888889, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10885; Mature: 10753

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHH
ARNPKSGDVVKIPAKKTPFFKTGKELRERVNTKEE
CCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
TKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHH
ARNPKSGDVVKIPAKKTPFFKTGKELRERVNTKEE
CCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA