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The map label for this gene is tapB [H]

Identifier: 78222081

GI number: 78222081

Start: 949510

End: 951438

Strand: Direct

Name: tapB [H]

Synonym: Gmet_0861

Alternate gene names: 78222081

Gene position: 949510-951438 (Clockwise)

Preceding gene: 78222080

Following gene: 78222082

Centisome position: 23.75

GC content: 59.51

Gene sequence:

>1929_bases
ATGTCCGTAAAGAAGGTCGGAGAGATACTTGTTGAAAATCGGCTGATTACCGAAGATCAGCTGCGGGAGGCCCTGGAACT
TCAGAAGGTCTTCCCCGATCAGCCCGTGGGGCAGCTCCTCTGCAAGCTCGGCTTCCTTACCGAAAGCGATCTCTCCTACA
TCCTTGAACAGACCGGCAAGCGCCAGAAGCTTGGCGATATCCTCGTGCGTGAGCGGCTCATCGACCAGGAACGTCTTGGC
CAGGCCCGCGAGGTCGCCAAGCGGGACGGCATCCCCCTCGCCAGGGCTCTGCGCAAGCTTCGCGTTGTGGAGGAGGAACC
CCTCGCCAAGGCGGTGGCCGTCCAGTACGATCTGTCTTTCGTGCACATCAATACCCTTGAGATTGAAGCGGAGCTTGCCC
GCTACATCAACCCCTCCTATGCCCAGAAGCAGCGGATTGTCCCCATCTCCAAGATTGGCAATACCCTGACCCTGGCCATG
GCCTATCCGATAAGACTCCAGGAGCTGAAGGATCTCGAGCAGAGCATCCGTTCGCGGATTATTCCCGTTATCGCCGTGGA
GAGTGAAATCCTCAAGGCCCAACAGCGCCTCTACCGGACCGCTGCCAGTTCTGTTGCCACCTTCGATGAGGCTGACCTTG
AGATCGGTCCGGGAAGCATCTCGGAAATCCTGGGGGCCAATGCCGACGATGAACCCGACATCGAGGACGAGGTCAAGAAG
GTATCCGAGCGTGACAGCATTATTGTGAAGCTCGTCAACAAGATCATCTTCGACGCCCACCAGAGCCGTGCCTCCGACAT
TCATATCGAGCCGTACCACGGCAAGAACGATATTGTTGTCCGGATGCGGGTGGACGGTCGGTGCAAGGTCTACCAGCGCA
TCCCCTACCGCTATAAGTACGCGATCCCCTCCCGCCTCAAGATCATGGCCGAGCTCGACATTGCCGAAAAACGCAAGCCC
CAGGACGGAAAGATCAATTTCAAGAAGTTCGGTCCCCTCGACATGGAGCTTCGCATCGCCACCATGCCTACCGCCGGCGG
GTTGGAGGATGTGGTGATCCGGCTTGTTAATACCGGCGAGACCTTTTCCTTTGATAAACTGGGCCTGACCGAACGGAACA
TGCGCATCTTCAGCGAGGCCGTAAGCAAGCCCTACGGCCTGGTTCTCGTGGTGGGCCCCACGGGGAGCGGCAAGACCACC
ACGCTCCACGCGGCGATTTCCCGGATAAACAGTCCCGAGGTGAAGATCTGGACCGCCGAGGACCCGGTGGAGATCACTCA
GAAGGGACTGCGGCAGGTGCAGGTCAACCCCCGGATTGGCCTCACCTTCCCGGCGGCGCTTCGTTCGTTCCTGCGGCTCG
ACCCCGATGTCATCATGGTGGGGGAAATGCGGGACGAGGAAACCGCTTCCATCGCCGTGGAGGCTTCCCTGACCGGACAC
CTGGTCCTTTCCACACTCCATACCAACTCGGCCCCCGAAACCGTGACCCGCCTTTTGGAGATCGGGCTTGATCCGTTCAG
CTTCTCCGATTCGCTTATCTGTATCGTTGCCCAGCGCCTGGCCCGGCGTCTCTGCGAGGAGTGCCGCGAGGTCTACCGTC
CTGACAGGCAGGAGCTTGCAGAGATCATCGCGGAGTACGGCGAGGAGCAGTTCGCCGCCACCGGCCTCGTGGGAAACGAA
CTCGTCCTTGCCCGGGCAGTGGGGTGCCCTTCCTGTGGCCAGACCGGCTACCGCGGCCGCCTCGGTATCCACGAGGTGCT
CGAATGTACGGATGGTCTGAAAAGCCTGATAAAAAAGCGGTCTGAAACCGAACTTATCCGCCGCCTGGCCATGGACGAAG
GGATGACGACCCTTCGTCAGGACGGCATACTTAAGGTCTTACAGGGCCTCACCGACATCCACGAGGTCCGCAAGGTTTGT
CTGAAATGA

Upstream 100 bases:

>100_bases
GGTCTTTCTTACCAATGTCGAGCTCGATCCGCTCTTCAGGGATCTCCTCGATTACAGCGGCTACTCGGTCATTTCCCATT
AAAGAGGGTTTCCTGCTGCC

Downstream 100 bases:

>100_bases
TGTTTGTGTAAACCAGAAAAGATTTGCATTTTTGCCATCTTTCCTATACATTACCCCCTCCACGGCATGTCCGCTAACTC
CCCACCGGATGGTCCCATAC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 641

Protein sequence:

>642_residues
MSVKKVGEILVENRLITEDQLREALELQKVFPDQPVGQLLCKLGFLTESDLSYILEQTGKRQKLGDILVRERLIDQERLG
QAREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSFVHINTLEIEAELARYINPSYAQKQRIVPISKIGNTLTLAM
AYPIRLQELKDLEQSIRSRIIPVIAVESEILKAQQRLYRTAASSVATFDEADLEIGPGSISEILGANADDEPDIEDEVKK
VSERDSIIVKLVNKIIFDAHQSRASDIHIEPYHGKNDIVVRMRVDGRCKVYQRIPYRYKYAIPSRLKIMAELDIAEKRKP
QDGKINFKKFGPLDMELRIATMPTAGGLEDVVIRLVNTGETFSFDKLGLTERNMRIFSEAVSKPYGLVLVVGPTGSGKTT
TLHAAISRINSPEVKIWTAEDPVEITQKGLRQVQVNPRIGLTFPAALRSFLRLDPDVIMVGEMRDEETASIAVEASLTGH
LVLSTLHTNSAPETVTRLLEIGLDPFSFSDSLICIVAQRLARRLCEECREVYRPDRQELAEIIAEYGEEQFAATGLVGNE
LVLARAVGCPSCGQTGYRGRLGIHEVLECTDGLKSLIKKRSETELIRRLAMDEGMTTLRQDGILKVLQGLTDIHEVRKVC
LK

Sequences:

>Translated_642_residues
MSVKKVGEILVENRLITEDQLREALELQKVFPDQPVGQLLCKLGFLTESDLSYILEQTGKRQKLGDILVRERLIDQERLG
QAREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSFVHINTLEIEAELARYINPSYAQKQRIVPISKIGNTLTLAM
AYPIRLQELKDLEQSIRSRIIPVIAVESEILKAQQRLYRTAASSVATFDEADLEIGPGSISEILGANADDEPDIEDEVKK
VSERDSIIVKLVNKIIFDAHQSRASDIHIEPYHGKNDIVVRMRVDGRCKVYQRIPYRYKYAIPSRLKIMAELDIAEKRKP
QDGKINFKKFGPLDMELRIATMPTAGGLEDVVIRLVNTGETFSFDKLGLTERNMRIFSEAVSKPYGLVLVVGPTGSGKTT
TLHAAISRINSPEVKIWTAEDPVEITQKGLRQVQVNPRIGLTFPAALRSFLRLDPDVIMVGEMRDEETASIAVEASLTGH
LVLSTLHTNSAPETVTRLLEIGLDPFSFSDSLICIVAQRLARRLCEECREVYRPDRQELAEIIAEYGEEQFAATGLVGNE
LVLARAVGCPSCGQTGYRGRLGIHEVLECTDGLKSLIKKRSETELIRRLAMDEGMTTLRQDGILKVLQGLTDIHEVRKVC
LK
>Mature_641_residues
SVKKVGEILVENRLITEDQLREALELQKVFPDQPVGQLLCKLGFLTESDLSYILEQTGKRQKLGDILVRERLIDQERLGQ
AREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSFVHINTLEIEAELARYINPSYAQKQRIVPISKIGNTLTLAMA
YPIRLQELKDLEQSIRSRIIPVIAVESEILKAQQRLYRTAASSVATFDEADLEIGPGSISEILGANADDEPDIEDEVKKV
SERDSIIVKLVNKIIFDAHQSRASDIHIEPYHGKNDIVVRMRVDGRCKVYQRIPYRYKYAIPSRLKIMAELDIAEKRKPQ
DGKINFKKFGPLDMELRIATMPTAGGLEDVVIRLVNTGETFSFDKLGLTERNMRIFSEAVSKPYGLVLVVGPTGSGKTTT
LHAAISRINSPEVKIWTAEDPVEITQKGLRQVQVNPRIGLTFPAALRSFLRLDPDVIMVGEMRDEETASIAVEASLTGHL
VLSTLHTNSAPETVTRLLEIGLDPFSFSDSLICIVAQRLARRLCEECREVYRPDRQELAEIIAEYGEEQFAATGLVGNEL
VLARAVGCPSCGQTGYRGRLGIHEVLECTDGLKSLIKKRSETELIRRLAMDEGMTTLRQDGILKVLQGLTDIHEVRKVCL
K

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=394, Percent_Identity=42.3857868020305, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI1786296, Length=400, Percent_Identity=41.75, Blast_Score=288, Evalue=1e-78,
Organism=Escherichia coli, GI87082188, Length=129, Percent_Identity=46.5116279069767, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 71891; Mature: 71760

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKKVGEILVENRLITEDQLREALELQKVFPDQPVGQLLCKLGFLTESDLSYILEQTGK
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
RQKLGDILVRERLIDQERLGQAREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSF
HHHHHHHHHHHHHHCHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEEEEEE
VHINTLEIEAELARYINPSYAQKQRIVPISKIGNTLTLAMAYPIRLQELKDLEQSIRSRI
EEEEEEEHHHHHHHHCCCCHHHHCCCCCHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCC
IPVIAVESEILKAQQRLYRTAASSVATFDEADLEIGPGSISEILGANADDEPDIEDEVKK
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCHHHHHHH
VSERDSIIVKLVNKIIFDAHQSRASDIHIEPYHGKNDIVVRMRVDGRCKVYQRIPYRYKY
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCEEHHHHCCCEEEE
AIPSRLKIMAELDIAEKRKPQDGKINFKKFGPLDMELRIATMPTAGGLEDVVIRLVNTGE
CCCHHHHHHHHCCHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCC
TFSFDKLGLTERNMRIFSEAVSKPYGLVLVVGPTGSGKTTTLHAAISRINSPEVKIWTAE
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECC
DPVEITQKGLRQVQVNPRIGLTFPAALRSFLRLDPDVIMVGEMRDEETASIAVEASLTGH
CCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCE
LVLSTLHTNSAPETVTRLLEIGLDPFSFSDSLICIVAQRLARRLCEECREVYRPDRQELA
EEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EIIAEYGEEQFAATGLVGNELVLARAVGCPSCGQTGYRGRLGIHEVLECTDGLKSLIKKR
HHHHHHCCHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
SETELIRRLAMDEGMTTLRQDGILKVLQGLTDIHEVRKVCLK
HHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVKKVGEILVENRLITEDQLREALELQKVFPDQPVGQLLCKLGFLTESDLSYILEQTGK
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
RQKLGDILVRERLIDQERLGQAREVAKRDGIPLARALRKLRVVEEEPLAKAVAVQYDLSF
HHHHHHHHHHHHHHCHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEEEEEE
VHINTLEIEAELARYINPSYAQKQRIVPISKIGNTLTLAMAYPIRLQELKDLEQSIRSRI
EEEEEEEHHHHHHHHCCCCHHHHCCCCCHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCC
IPVIAVESEILKAQQRLYRTAASSVATFDEADLEIGPGSISEILGANADDEPDIEDEVKK
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCHHHHHHH
VSERDSIIVKLVNKIIFDAHQSRASDIHIEPYHGKNDIVVRMRVDGRCKVYQRIPYRYKY
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCEEHHHHCCCEEEE
AIPSRLKIMAELDIAEKRKPQDGKINFKKFGPLDMELRIATMPTAGGLEDVVIRLVNTGE
CCCHHHHHHHHCCHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCC
TFSFDKLGLTERNMRIFSEAVSKPYGLVLVVGPTGSGKTTTLHAAISRINSPEVKIWTAE
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECC
DPVEITQKGLRQVQVNPRIGLTFPAALRSFLRLDPDVIMVGEMRDEETASIAVEASLTGH
CCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCE
LVLSTLHTNSAPETVTRLLEIGLDPFSFSDSLICIVAQRLARRLCEECREVYRPDRQELA
EEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EIIAEYGEEQFAATGLVGNELVLARAVGCPSCGQTGYRGRLGIHEVLECTDGLKSLIKKR
HHHHHHCCHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
SETELIRRLAMDEGMTTLRQDGILKVLQGLTDIHEVRKVCLK
HHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]