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The map label for this gene is bphB [H]

Identifier: 78221886

GI number: 78221886

Start: 730316

End: 732172

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_0666

Alternate gene names: 78221886

Gene position: 732172-730316 (Counterclockwise)

Preceding gene: 78221887

Following gene: 78221881

Centisome position: 18.32

GC content: 58.43

Gene sequence:

>1857_bases
ATGCCGTACGACATCTTTCATCCCGACCGCGAAGCGCTCATGGCGATTGTTGAGGCGCTGCCGGTGGCCGCGTTGTACAC
CGAAGGCGACCACATCTGCTTCAACCGGGCTGCCGAGCGTCTCATCGGTTACGGGATGGACGAGATTAGATCAATCGACG
ACTGGTTCCAAAAGCTCCACGGCCCGTGCAATAAAAAAATCCGAGAGATTTACGATTCCGACAGGACTGCGGGGTTCCCT
GCCCCGCGACGCGTCGCCATCACCACGAAAGACGGATGCCGCCGCCACGTTGAGTTTAGCGCCTCAGGAACAGACCGGAT
CATCTACATCATGCACGACATCACCGACCTGGTGTCTGCCCAGGAGCAGGTGAAGGAGAATGCCGCGCGGTACCAGATCC
TCAACAGCACCTCCATGGACGGTTTCTGGGTGGTTGACCAGAACGGCAAGATCATCGAAATGAACGATGCCTGCTGTGCG
ATGCTGGGGTATAGCCGCGAAGAACTCCTGGCCATCAACCTCAGGGATATCGAAACCGCCGAAAGCTCGGAAGAGACCGC
CAAACACATGCGCGCCCTCATCAACAGCGGCTATGACCGTTTCGAAACCCGTCATCGCCGTAAAGACGGATCTATCATCG
ACGTGGAAATCAGCACGACGTACGAGCGCACCACGAACTGCTTCTTGGCCTTTCTCCGGGACATCACCGATCACAAACAC
GCGGATAAGGCCTTGCGGCAAAGCGAGGAGCGCTACCGCCGCTTTTCATCGCTCACCTCTGACTATGTCAATTTCTGCAG
CCGTCAAGGAGATTCCCCCTACCGGGTCCGGTGGATGGGTGGCGCGGTGGAGGCGATAACCGGCTATTCAGCGGAGCAGA
TTCATGAATGGGGCTGTTGGATGAGGTTGGTACACCCCGACGATCGGGACCGGGTGAGCAGCAATGTCATGAAATTGGCG
CCGGGTGAAACCTATTCTGACGAATTCCGGATCATTGCAAAGAATGGCACTATCCATTGGATACTCGAGGCATGCCGCTG
CGAGGCGGGGGAGGCTCCCGGCGAACTATTCCTTTTCGGCACCTCTCAGGATATAACCGAGCGCAAGCTGGCCGAGGAAG
AAATTCGCACGCTGAACGAAACGCTGGAAAGGCGGGTCGAAGAACGGACTGCCCAACTGGAGGCTGCCATCCGGGAGCAG
GAGTCTTTCAGCTACTCGGTTTCCCATGACCTGCGGGCTCCGCTGCGCCACATCAACAGTTACAGCGCCATGGTGATAGA
GGATTTCGAGAAACAGCTTCCGACAGAGGCCCGTCGCTACCTGGAACGCATCGGCATGGCAAGCGCCCGCATGGGCCAGC
TCATCGACGACCTGCTGGAACTGTCGCGGGTCAACCGGGTAGAACTGCACAGGAGCACGATCAATCTCAGCAAAACGGCA
GCAATGATTGTCGCCATGTTCAGGGAAACGGAGCCGGACCGGACCGTTGAGTGGGTCATTGCCGACGGCCTCACGGCCCG
GGCCGACAAGATTCTCATTCGCCAGGTCCTGCTGAACCTGCTGGGAAATGCATTGAAGTACTCCGCCAAAACGCCTCAAG
CCCTCATCGAGTTCGGCACCGCGTACGTGGAAGGAGAACGCGCCTTCTTTGTCAAAGACAATGGGTCAGGTTTCAACATG
GCCTACGTGAGCAAGCTCTTCCGCCCCTTCCAGCGGCTCCACGGCAGCGAATTCCAGGGGACCGGCATCGGCCTTGCCAC
GGTGAAGCGAATCATCGAACGCCACGGGGGCCGGGTCTGGGCCGAGGGGAGCGTCGATGCGGGAGCGACATTCTACTTCA
CCCTGCCGGAGAGATGA

Upstream 100 bases:

>100_bases
CAAACACGACCTTTCCGGCACAGCCGTTGCTTACCCTTTACCAGGTATCTATACTGATTTTGTTACTCCCCCCCTTCAAG
GTTTCAACGATAGGACCACT

Downstream 100 bases:

>100_bases
CCGTTTAACAGGCCACAAGCATAAAGCAGAATCCGGTGACAGGAGGTGAGCGCAGCAACGGGCACCAGGTAACACGAACG
GCCCGCCGAGTTATCCTGGC

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 617

Protein sequence:

>618_residues
MPYDIFHPDREALMAIVEALPVAALYTEGDHICFNRAAERLIGYGMDEIRSIDDWFQKLHGPCNKKIREIYDSDRTAGFP
APRRVAITTKDGCRRHVEFSASGTDRIIYIMHDITDLVSAQEQVKENAARYQILNSTSMDGFWVVDQNGKIIEMNDACCA
MLGYSREELLAINLRDIETAESSEETAKHMRALINSGYDRFETRHRRKDGSIIDVEISTTYERTTNCFLAFLRDITDHKH
ADKALRQSEERYRRFSSLTSDYVNFCSRQGDSPYRVRWMGGAVEAITGYSAEQIHEWGCWMRLVHPDDRDRVSSNVMKLA
PGETYSDEFRIIAKNGTIHWILEACRCEAGEAPGELFLFGTSQDITERKLAEEEIRTLNETLERRVEERTAQLEAAIREQ
ESFSYSVSHDLRAPLRHINSYSAMVIEDFEKQLPTEARRYLERIGMASARMGQLIDDLLELSRVNRVELHRSTINLSKTA
AMIVAMFRETEPDRTVEWVIADGLTARADKILIRQVLLNLLGNALKYSAKTPQALIEFGTAYVEGERAFFVKDNGSGFNM
AYVSKLFRPFQRLHGSEFQGTGIGLATVKRIIERHGGRVWAEGSVDAGATFYFTLPER

Sequences:

>Translated_618_residues
MPYDIFHPDREALMAIVEALPVAALYTEGDHICFNRAAERLIGYGMDEIRSIDDWFQKLHGPCNKKIREIYDSDRTAGFP
APRRVAITTKDGCRRHVEFSASGTDRIIYIMHDITDLVSAQEQVKENAARYQILNSTSMDGFWVVDQNGKIIEMNDACCA
MLGYSREELLAINLRDIETAESSEETAKHMRALINSGYDRFETRHRRKDGSIIDVEISTTYERTTNCFLAFLRDITDHKH
ADKALRQSEERYRRFSSLTSDYVNFCSRQGDSPYRVRWMGGAVEAITGYSAEQIHEWGCWMRLVHPDDRDRVSSNVMKLA
PGETYSDEFRIIAKNGTIHWILEACRCEAGEAPGELFLFGTSQDITERKLAEEEIRTLNETLERRVEERTAQLEAAIREQ
ESFSYSVSHDLRAPLRHINSYSAMVIEDFEKQLPTEARRYLERIGMASARMGQLIDDLLELSRVNRVELHRSTINLSKTA
AMIVAMFRETEPDRTVEWVIADGLTARADKILIRQVLLNLLGNALKYSAKTPQALIEFGTAYVEGERAFFVKDNGSGFNM
AYVSKLFRPFQRLHGSEFQGTGIGLATVKRIIERHGGRVWAEGSVDAGATFYFTLPER
>Mature_617_residues
PYDIFHPDREALMAIVEALPVAALYTEGDHICFNRAAERLIGYGMDEIRSIDDWFQKLHGPCNKKIREIYDSDRTAGFPA
PRRVAITTKDGCRRHVEFSASGTDRIIYIMHDITDLVSAQEQVKENAARYQILNSTSMDGFWVVDQNGKIIEMNDACCAM
LGYSREELLAINLRDIETAESSEETAKHMRALINSGYDRFETRHRRKDGSIIDVEISTTYERTTNCFLAFLRDITDHKHA
DKALRQSEERYRRFSSLTSDYVNFCSRQGDSPYRVRWMGGAVEAITGYSAEQIHEWGCWMRLVHPDDRDRVSSNVMKLAP
GETYSDEFRIIAKNGTIHWILEACRCEAGEAPGELFLFGTSQDITERKLAEEEIRTLNETLERRVEERTAQLEAAIREQE
SFSYSVSHDLRAPLRHINSYSAMVIEDFEKQLPTEARRYLERIGMASARMGQLIDDLLELSRVNRVELHRSTINLSKTAA
MIVAMFRETEPDRTVEWVIADGLTARADKILIRQVLLNLLGNALKYSAKTPQALIEFGTAYVEGERAFFVKDNGSGFNMA
YVSKLFRPFQRLHGSEFQGTGIGLATVKRIIERHGGRVWAEGSVDAGATFYFTLPER

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=276, Percent_Identity=27.536231884058, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788549, Length=389, Percent_Identity=26.9922879177378, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786783, Length=253, Percent_Identity=26.8774703557312, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786912, Length=231, Percent_Identity=29.4372294372294, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1786600, Length=238, Percent_Identity=28.1512605042017, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787894, Length=232, Percent_Identity=30.1724137931034, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693157, Length=255, Percent_Identity=24.7058823529412, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789149, Length=258, Percent_Identity=24.8062015503876, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790346, Length=231, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788393, Length=242, Percent_Identity=25.6198347107438, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790436, Length=222, Percent_Identity=25.2252252252252, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 70578; Mature: 70446

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYDIFHPDREALMAIVEALPVAALYTEGDHICFNRAAERLIGYGMDEIRSIDDWFQKLH
CCCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GPCNKKIREIYDSDRTAGFPAPRRVAITTKDGCRRHVEFSASGTDRIIYIMHDITDLVSA
CHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
QEQVKENAARYQILNSTSMDGFWVVDQNGKIIEMNDACCAMLGYSREELLAINLRDIETA
HHHHHHHHHHEEEECCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCCEEEEEEHHCCCC
ESSEETAKHMRALINSGYDRFETRHRRKDGSIIDVEISTTYERTTNCFLAFLRDITDHKH
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
ADKALRQSEERYRRFSSLTSDYVNFCSRQGDSPYRVRWMGGAVEAITGYSAEQIHEWGCW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCHHHHHHHCCE
MRLVHPDDRDRVSSNVMKLAPGETYSDEFRIIAKNGTIHWILEACRCEAGEAPGELFLFG
EEEECCCCHHHHHCCCEEECCCCCCCCCEEEEEECCCEEEHHHHHHCCCCCCCCCEEEEE
TSQDITERKLAEEEIRTLNETLERRVEERTAQLEAAIREQESFSYSVSHDLRAPLRHINS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCC
YSAMVIEDFEKQLPTEARRYLERIGMASARMGQLIDDLLELSRVNRVELHRSTINLSKTA
CHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHH
AMIVAMFRETEPDRTVEWVIADGLTARADKILIRQVLLNLLGNALKYSAKTPQALIEFGT
HHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AYVEGERAFFVKDNGSGFNMAYVSKLFRPFQRLHGSEFQGTGIGLATVKRIIERHGGRVW
HEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEE
AEGSVDAGATFYFTLPER
ECCCCCCCCEEEEECCCC
>Mature Secondary Structure 
PYDIFHPDREALMAIVEALPVAALYTEGDHICFNRAAERLIGYGMDEIRSIDDWFQKLH
CCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GPCNKKIREIYDSDRTAGFPAPRRVAITTKDGCRRHVEFSASGTDRIIYIMHDITDLVSA
CHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
QEQVKENAARYQILNSTSMDGFWVVDQNGKIIEMNDACCAMLGYSREELLAINLRDIETA
HHHHHHHHHHEEEECCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCCEEEEEEHHCCCC
ESSEETAKHMRALINSGYDRFETRHRRKDGSIIDVEISTTYERTTNCFLAFLRDITDHKH
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
ADKALRQSEERYRRFSSLTSDYVNFCSRQGDSPYRVRWMGGAVEAITGYSAEQIHEWGCW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCHHHHHHHCCE
MRLVHPDDRDRVSSNVMKLAPGETYSDEFRIIAKNGTIHWILEACRCEAGEAPGELFLFG
EEEECCCCHHHHHCCCEEECCCCCCCCCEEEEEECCCEEEHHHHHHCCCCCCCCCEEEEE
TSQDITERKLAEEEIRTLNETLERRVEERTAQLEAAIREQESFSYSVSHDLRAPLRHINS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCC
YSAMVIEDFEKQLPTEARRYLERIGMASARMGQLIDDLLELSRVNRVELHRSTINLSKTA
CHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHH
AMIVAMFRETEPDRTVEWVIADGLTARADKILIRQVLLNLLGNALKYSAKTPQALIEFGT
HHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AYVEGERAFFVKDNGSGFNMAYVSKLFRPFQRLHGSEFQGTGIGLATVKRIIERHGGRVW
HEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEE
AEGSVDAGATFYFTLPER
ECCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]